Analysis of Ligand-Protein Contacts in PDB entry:
8ED4


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 31 ligands in PDB entry 8ED4. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
MGD
A
2001 47 DINUCLEOTIDE
lig 2
MGD
A
2002 47 DINUCLEOTIDE
lig 3
4MO
A
2003 1MOLYBDENUM(IV) ION
lig 4
F3S
A
2004 7FE3-S4 CLUSTER
lig 5
O
A
2005 1OXYGEN ATOM
lig 6
FES
B
201 4FE2/S2 (INORGANIC) CLUSTER
lig 7
HEM
I
200 43PROTOPORPHYRIN IX CONTAINING FE
lig 8
MGD
C
2001 47 DINUCLEOTIDE
lig 9
MGD
C
2002 47 DINUCLEOTIDE
lig 10
4MO
C
2003 1MOLYBDENUM(IV) ION
lig 11
F3S
C
2004 7FE3-S4 CLUSTER
lig 12
O
C
2005 1OXYGEN ATOM
lig 13
FES
D
201 4FE2/S2 (INORGANIC) CLUSTER
lig 14
HEM
J
200 43PROTOPORPHYRIN IX CONTAINING FE
lig 15
MGD
E
2001 47 DINUCLEOTIDE
lig 16
MGD
E
2002 47 DINUCLEOTIDE
lig 17
4MO
E
2003 1MOLYBDENUM(IV) ION
lig 18
F3S
E
2004 7FE3-S4 CLUSTER
lig 19
O
E
2005 1OXYGEN ATOM
lig 20
GOL
E
2006 6GLYCEROL
lig 21
PG4
E
2007 13TETRAETHYLENE GLYCOL
lig 22
FES
F
201 4FE2/S2 (INORGANIC) CLUSTER
lig 23
HEC
K
200 43HEME C
lig 24
MGD
G
2001 47 DINUCLEOTIDE
lig 25
MGD
G
2002 47 DINUCLEOTIDE
lig 26
4MO
G
2003 1MOLYBDENUM(IV) ION
lig 27
F3S
G
2004 7FE3-S4 CLUSTER
lig 28
O
G
2005 1OXYGEN ATOM
lig 29
PG4
G
2006 13TETRAETHYLENE GLYCOL
lig 30
FES
H
201 4FE2/S2 (INORGANIC) CLUSTER
lig 31
HEM
L
200 43PROTOPORPHYRIN IX CONTAINING FE