Analysis of Ligand-Protein Contacts in PDB entry:
8F4D

Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 192 ligands in PDB entry 8F4D. Click on ligand of interest for LPC analysis.

	HET ID	Chain ID	Residue N	Number of atoms	Ligand name
lig 1	FME	I	1	10	N-FORMYLMETHIONINE
lig 2	FME	M	1	10	N-FORMYLMETHIONINE
lig 3	FME	T	1	10	N-FORMYLMETHIONINE
lig 4	FME	i	1	10	N-FORMYLMETHIONINE
lig 5	FME	m	1	10	N-FORMYLMETHIONINE
lig 6	FME	t	1	10	N-FORMYLMETHIONINE
lig 7	OEX	A	602	10	CA-MN4-O5 CLUSTER
lig 8	FE2	A	603	1	FE (II) ION
lig 9	CL	A	604	1	CHLORIDE ION
lig 10	CL	A	605	1	CHLORIDE ION
lig 11	CLA	A	606	65	CHLOROPHYLL A
lig 12	CLA	A	607	65	CHLOROPHYLL A
lig 13	PHO	A	608	64	PHEOPHYTIN A
lig 14	CLA	A	609	54	CHLOROPHYLL A
lig 15	BCR	A	610	40	BETA-CAROTENE
lig 16	PL9	A	611	55	BENZOQUINONE
lig 17	LMG	A	612	48	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 18	SQD	A	613	52	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 19	SQD	A	614	39	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 20	DGD	A	615	66	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 21	CLA	B	601	65	CHLOROPHYLL A
lig 22	CLA	B	602	65	CHLOROPHYLL A
lig 23	CLA	B	603	65	CHLOROPHYLL A
lig 24	CLA	B	604	65	CHLOROPHYLL A
lig 25	CLA	B	605	65	CHLOROPHYLL A
lig 26	CLA	B	606	65	CHLOROPHYLL A
lig 27	CLA	B	607	65	CHLOROPHYLL A
lig 28	CLA	B	608	65	CHLOROPHYLL A
lig 29	CLA	B	609	65	CHLOROPHYLL A
lig 30	CLA	B	610	65	CHLOROPHYLL A
lig 31	CLA	B	611	65	CHLOROPHYLL A
lig 32	CLA	B	612	65	CHLOROPHYLL A
lig 33	CLA	B	613	65	CHLOROPHYLL A
lig 34	CLA	B	614	65	CHLOROPHYLL A
lig 35	CLA	B	615	65	CHLOROPHYLL A
lig 36	CLA	B	616	60	CHLOROPHYLL A
lig 37	BCR	B	617	40	BETA-CAROTENE
lig 38	BCR	B	618	40	BETA-CAROTENE
lig 39	BCR	B	619	40	BETA-CAROTENE
lig 40	STE	B	620	17	STEARIC ACID
lig 41	LMG	B	621	28	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 42	SQD	B	622	54	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 43	STE	B	623	12	STEARIC ACID
lig 44	STE	B	624	12	STEARIC ACID
lig 45	STE	B	625	16	STEARIC ACID
lig 46	CLA	C	501	65	CHLOROPHYLL A
lig 47	CLA	C	502	65	CHLOROPHYLL A
lig 48	CLA	C	503	65	CHLOROPHYLL A
lig 49	CLA	C	504	59	CHLOROPHYLL A
lig 50	CLA	C	505	65	CHLOROPHYLL A
lig 51	CLA	C	506	65	CHLOROPHYLL A
lig 52	CLA	C	507	65	CHLOROPHYLL A
lig 53	CLA	C	508	65	CHLOROPHYLL A
lig 54	CLA	C	509	65	CHLOROPHYLL A
lig 55	CLA	C	510	65	CHLOROPHYLL A
lig 56	CLA	C	511	65	CHLOROPHYLL A
lig 57	CLA	C	512	65	CHLOROPHYLL A
lig 58	CLA	C	513	65	CHLOROPHYLL A
lig 59	BCR	C	514	40	BETA-CAROTENE
lig 60	BCR	C	515	40	BETA-CAROTENE
lig 61	DGD	C	516	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 62	DGD	C	517	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 63	DGD	C	518	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 64	LMG	C	519	48	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 65	STE	C	520	12	STEARIC ACID
lig 66	STE	C	521	12	STEARIC ACID
lig 67	STE	C	522	16	STEARIC ACID
lig 68	BCT	D	401	4	BICARBONATE ION
lig 69	PHO	D	402	64	PHEOPHYTIN A
lig 70	CLA	D	403	65	CHLOROPHYLL A
lig 71	CLA	D	404	65	CHLOROPHYLL A
lig 72	CLA	D	405	65	CHLOROPHYLL A
lig 73	BCR	D	406	40	BETA-CAROTENE
lig 74	PL9	D	407	55	BENZOQUINONE
lig 75	LMG	D	408	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 76	SQD	D	409	36	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 77	LHG	D	410	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 78	LHG	D	411	47	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 79	LMG	D	412	33	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 80	LHG	D	413	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 81	LHG	E	101	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 82	HEM	F	101	43	PROTOPORPHYRIN IX CONTAINING FE
lig 83	BCR	H	101	40	BETA-CAROTENE
lig 84	DGD	H	102	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 85	STE	H	103	18	STEARIC ACID
lig 86	STE	I	101	15	STEARIC ACID
lig 87	STE	J	101	12	STEARIC ACID
lig 88	BCR	K	101	40	BETA-CAROTENE
lig 89	BCR	K	102	40	BETA-CAROTENE
lig 90	SQD	L	101	49	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 91	LHG	L	102	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 92	STE	L	103	12	STEARIC ACID
lig 93	LMG	M	101	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 94	STE	M	102	15	STEARIC ACID
lig 95	STE	M	103	10	STEARIC ACID
lig 96	BCR	T	101	40	BETA-CAROTENE
lig 97	HEC	V	201	43	HEME C
lig 98	STE	X	101	20	STEARIC ACID
lig 99	STE	R	101	12	STEARIC ACID
lig 100	OEX	a	602	10	CA-MN4-O5 CLUSTER
lig 101	FE2	a	603	1	FE (II) ION
lig 102	CL	a	604	1	CHLORIDE ION
lig 103	CL	a	605	1	CHLORIDE ION
lig 104	CLA	a	606	65	CHLOROPHYLL A
lig 105	CLA	a	607	65	CHLOROPHYLL A
lig 106	PHO	a	608	64	PHEOPHYTIN A
lig 107	CLA	a	609	65	CHLOROPHYLL A
lig 108	BCR	a	610	40	BETA-CAROTENE
lig 109	PL9	a	611	55	BENZOQUINONE
lig 110	CLA	a	612	65	CHLOROPHYLL A
lig 111	SQD	a	613	54	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 112	DGD	a	614	44	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 113	STE	a	615	10	STEARIC ACID
lig 114	STE	a	616	12	STEARIC ACID
lig 115	CLA	b	601	65	CHLOROPHYLL A
lig 116	CLA	b	602	65	CHLOROPHYLL A
lig 117	CLA	b	603	65	CHLOROPHYLL A
lig 118	CLA	b	604	65	CHLOROPHYLL A
lig 119	CLA	b	605	65	CHLOROPHYLL A
lig 120	CLA	b	606	65	CHLOROPHYLL A
lig 121	CLA	b	607	65	CHLOROPHYLL A
lig 122	CLA	b	608	65	CHLOROPHYLL A
lig 123	CLA	b	609	65	CHLOROPHYLL A
lig 124	CLA	b	610	65	CHLOROPHYLL A
lig 125	CLA	b	611	65	CHLOROPHYLL A
lig 126	CLA	b	612	65	CHLOROPHYLL A
lig 127	CLA	b	613	65	CHLOROPHYLL A
lig 128	CLA	b	614	65	CHLOROPHYLL A
lig 129	CLA	b	615	65	CHLOROPHYLL A
lig 130	CLA	b	616	60	CHLOROPHYLL A
lig 131	BCR	b	617	40	BETA-CAROTENE
lig 132	BCR	b	618	40	BETA-CAROTENE
lig 133	BCR	b	619	40	BETA-CAROTENE
lig 134	STE	b	620	16	STEARIC ACID
lig 135	STE	b	621	20	STEARIC ACID
lig 136	LMG	b	622	55	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 137	STE	b	623	16	STEARIC ACID
lig 138	STE	b	624	15	STEARIC ACID
lig 139	STE	b	625	20	STEARIC ACID
lig 140	STE	b	626	10	STEARIC ACID
lig 141	CLA	c	501	65	CHLOROPHYLL A
lig 142	CLA	c	502	65	CHLOROPHYLL A
lig 143	CLA	c	503	65	CHLOROPHYLL A
lig 144	CLA	c	504	60	CHLOROPHYLL A
lig 145	CLA	c	505	65	CHLOROPHYLL A
lig 146	CLA	c	506	65	CHLOROPHYLL A
lig 147	CLA	c	507	65	CHLOROPHYLL A
lig 148	CLA	c	508	64	CHLOROPHYLL A
lig 149	CLA	c	509	65	CHLOROPHYLL A
lig 150	CLA	c	510	65	CHLOROPHYLL A
lig 151	CLA	c	511	65	CHLOROPHYLL A
lig 152	CLA	c	512	65	CHLOROPHYLL A
lig 153	CLA	c	513	65	CHLOROPHYLL A
lig 154	BCR	c	514	40	BETA-CAROTENE
lig 155	BCR	c	515	40	BETA-CAROTENE
lig 156	DGD	c	516	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 157	DGD	c	517	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 158	DGD	c	518	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 159	LMG	c	519	37	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 160	STE	c	520	20	STEARIC ACID
lig 161	LMG	c	521	48	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 162	STE	c	522	12	STEARIC ACID
lig 163	LMG	c	523	49	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 164	BCT	d	401	4	BICARBONATE ION
lig 165	PHO	d	402	64	PHEOPHYTIN A
lig 166	CLA	d	403	65	CHLOROPHYLL A
lig 167	CLA	d	404	65	CHLOROPHYLL A
lig 168	BCR	d	405	40	BETA-CAROTENE
lig 169	PL9	d	406	55	BENZOQUINONE
lig 170	LHG	d	407	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 171	LHG	d	408	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 172	LHG	d	409	39	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 173	LMG	d	410	23	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 174	LMG	d	411	44	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 175	STE	d	412	17	STEARIC ACID
lig 176	STE	d	413	20	STEARIC ACID
lig 177	HEM	e	101	43	PROTOPORPHYRIN IX CONTAINING FE
lig 178	LHG	e	102	42	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 179	SQD	f	101	41	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 180	BCR	h	101	40	BETA-CAROTENE
lig 181	DGD	h	102	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 182	STE	j	101	12	STEARIC ACID
lig 183	BCR	k	101	40	BETA-CAROTENE
lig 184	BCR	k	102	40	BETA-CAROTENE
lig 185	LHG	l	101	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 186	STE	l	102	18	STEARIC ACID
lig 187	LMG	m	101	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 188	BCR	t	101	40	BETA-CAROTENE
lig 189	SQD	t	102	36	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 190	STE	t	103	14	STEARIC ACID
lig 191	STE	t	104	18	STEARIC ACID
lig 192	HEC	v	201	43	HEME C

Analysis of Ligand-Protein Contacts in PDB entry: 8F4D

Analysis of Ligand-Protein Contacts in PDB entry:
8F4D