Analysis of Ligand-Protein Contacts in PDB entry:
8F4E

Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 192 ligands in PDB entry 8F4E. Click on ligand of interest for LPC analysis.

	HET ID	Chain ID	Residue N	Number of atoms	Ligand name
lig 1	FME	I	1	10	N-FORMYLMETHIONINE
lig 2	FME	M	1	10	N-FORMYLMETHIONINE
lig 3	FME	T	1	10	N-FORMYLMETHIONINE
lig 4	FME	i	1	10	N-FORMYLMETHIONINE
lig 5	FME	m	1	10	N-FORMYLMETHIONINE
lig 6	FME	t	1	10	N-FORMYLMETHIONINE
lig 7	OEX	A	602	10	CA-MN4-O5 CLUSTER
lig 8	FE2	A	603	1	FE (II) ION
lig 9	CL	A	604	1	CHLORIDE ION
lig 10	CL	A	605	1	CHLORIDE ION
lig 11	CLA	A	606	65	CHLOROPHYLL A
lig 12	CLA	A	607	65	CHLOROPHYLL A
lig 13	PHO	A	608	64	PHEOPHYTIN A
lig 14	PHO	A	609	64	PHEOPHYTIN A
lig 15	CLA	A	610	54	CHLOROPHYLL A
lig 16	BCR	A	611	40	BETA-CAROTENE
lig 17	PL9	A	612	55	BENZOQUINONE
lig 18	CLA	A	613	65	CHLOROPHYLL A
lig 19	SQD	A	614	52	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 20	SQD	A	615	39	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 21	DGD	A	616	66	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 22	CLA	B	601	65	CHLOROPHYLL A
lig 23	CLA	B	602	65	CHLOROPHYLL A
lig 24	CLA	B	603	65	CHLOROPHYLL A
lig 25	CLA	B	604	65	CHLOROPHYLL A
lig 26	CLA	B	605	65	CHLOROPHYLL A
lig 27	CLA	B	606	65	CHLOROPHYLL A
lig 28	CLA	B	607	65	CHLOROPHYLL A
lig 29	CLA	B	608	65	CHLOROPHYLL A
lig 30	CLA	B	609	65	CHLOROPHYLL A
lig 31	CLA	B	610	65	CHLOROPHYLL A
lig 32	CLA	B	611	65	CHLOROPHYLL A
lig 33	CLA	B	612	65	CHLOROPHYLL A
lig 34	CLA	B	613	65	CHLOROPHYLL A
lig 35	CLA	B	614	65	CHLOROPHYLL A
lig 36	CLA	B	615	60	CHLOROPHYLL A
lig 37	BCR	B	616	40	BETA-CAROTENE
lig 38	BCR	B	617	40	BETA-CAROTENE
lig 39	BCR	B	618	40	BETA-CAROTENE
lig 40	STE	B	619	17	STEARIC ACID
lig 41	LMG	B	620	28	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 42	LHG	B	621	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 43	LHG	B	622	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 44	STE	B	623	12	STEARIC ACID
lig 45	STE	B	624	18	STEARIC ACID
lig 46	STE	B	625	12	STEARIC ACID
lig 47	STE	B	626	16	STEARIC ACID
lig 48	CLA	C	501	65	CHLOROPHYLL A
lig 49	CLA	C	502	65	CHLOROPHYLL A
lig 50	CLA	C	503	65	CHLOROPHYLL A
lig 51	CLA	C	504	59	CHLOROPHYLL A
lig 52	CLA	C	505	65	CHLOROPHYLL A
lig 53	CLA	C	506	65	CHLOROPHYLL A
lig 54	CLA	C	507	65	CHLOROPHYLL A
lig 55	CLA	C	508	65	CHLOROPHYLL A
lig 56	CLA	C	509	65	CHLOROPHYLL A
lig 57	CLA	C	510	65	CHLOROPHYLL A
lig 58	CLA	C	511	65	CHLOROPHYLL A
lig 59	CLA	C	512	65	CHLOROPHYLL A
lig 60	CLA	C	513	65	CHLOROPHYLL A
lig 61	BCR	C	514	40	BETA-CAROTENE
lig 62	LMG	C	515	48	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 63	DGD	C	516	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 64	DGD	C	517	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 65	DGD	C	518	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 66	LMG	C	519	48	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 67	STE	C	520	12	STEARIC ACID
lig 68	STE	C	521	12	STEARIC ACID
lig 69	STE	C	522	16	STEARIC ACID
lig 70	BCT	D	401	4	BICARBONATE ION
lig 71	CLA	D	402	65	CHLOROPHYLL A
lig 72	CLA	D	403	65	CHLOROPHYLL A
lig 73	BCR	D	404	40	BETA-CAROTENE
lig 74	PL9	D	405	55	BENZOQUINONE
lig 75	LMG	D	406	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 76	LHG	D	407	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 77	LHG	D	408	47	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 78	LMG	D	409	33	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 79	STE	D	410	20	STEARIC ACID
lig 80	LHG	E	101	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 81	HEM	F	101	43	PROTOPORPHYRIN IX CONTAINING FE
lig 82	SQD	F	102	36	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 83	CLA	H	101	65	CHLOROPHYLL A
lig 84	BCR	H	102	40	BETA-CAROTENE
lig 85	DGD	H	103	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 86	STE	H	104	18	STEARIC ACID
lig 87	STE	I	101	15	STEARIC ACID
lig 88	STE	J	101	12	STEARIC ACID
lig 89	BCR	K	101	40	BETA-CAROTENE
lig 90	BCR	K	102	40	BETA-CAROTENE
lig 91	BCR	K	103	40	BETA-CAROTENE
lig 92	SQD	L	101	49	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 93	LMG	M	101	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 94	STE	M	102	15	STEARIC ACID
lig 95	STE	M	103	10	STEARIC ACID
lig 96	BCR	T	101	40	BETA-CAROTENE
lig 97	STE	T	102	16	STEARIC ACID
lig 98	STE	T	103	15	STEARIC ACID
lig 99	HEC	V	201	43	HEME C
lig 100	STE	R	101	12	STEARIC ACID
lig 101	OEX	a	602	10	CA-MN4-O5 CLUSTER
lig 102	FE2	a	603	1	FE (II) ION
lig 103	CL	a	604	1	CHLORIDE ION
lig 104	CL	a	605	1	CHLORIDE ION
lig 105	BCT	a	606	4	BICARBONATE ION
lig 106	CLA	a	607	65	CHLOROPHYLL A
lig 107	CLA	a	608	65	CHLOROPHYLL A
lig 108	PHO	a	609	64	PHEOPHYTIN A
lig 109	CLA	a	610	65	CHLOROPHYLL A
lig 110	BCR	a	611	40	BETA-CAROTENE
lig 111	PL9	a	612	55	BENZOQUINONE
lig 112	CLA	a	613	65	CHLOROPHYLL A
lig 113	SQD	a	614	54	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 114	SQD	a	615	36	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 115	DGD	a	616	44	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 116	STE	a	617	12	STEARIC ACID
lig 117	CLA	b	601	65	CHLOROPHYLL A
lig 118	CLA	b	602	65	CHLOROPHYLL A
lig 119	CLA	b	603	65	CHLOROPHYLL A
lig 120	CLA	b	604	65	CHLOROPHYLL A
lig 121	CLA	b	605	65	CHLOROPHYLL A
lig 122	CLA	b	606	65	CHLOROPHYLL A
lig 123	CLA	b	607	65	CHLOROPHYLL A
lig 124	CLA	b	608	65	CHLOROPHYLL A
lig 125	CLA	b	609	65	CHLOROPHYLL A
lig 126	CLA	b	610	65	CHLOROPHYLL A
lig 127	CLA	b	611	65	CHLOROPHYLL A
lig 128	CLA	b	612	65	CHLOROPHYLL A
lig 129	CLA	b	613	65	CHLOROPHYLL A
lig 130	CLA	b	614	65	CHLOROPHYLL A
lig 131	CLA	b	615	60	CHLOROPHYLL A
lig 132	BCR	b	616	40	BETA-CAROTENE
lig 133	BCR	b	617	40	BETA-CAROTENE
lig 134	BCR	b	618	40	BETA-CAROTENE
lig 135	STE	b	619	20	STEARIC ACID
lig 136	LMG	b	620	55	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 137	STE	b	621	16	STEARIC ACID
lig 138	STE	b	622	20	STEARIC ACID
lig 139	STE	b	623	10	STEARIC ACID
lig 140	CLA	c	501	65	CHLOROPHYLL A
lig 141	CLA	c	502	65	CHLOROPHYLL A
lig 142	CLA	c	503	65	CHLOROPHYLL A
lig 143	CLA	c	504	60	CHLOROPHYLL A
lig 144	CLA	c	505	65	CHLOROPHYLL A
lig 145	CLA	c	506	65	CHLOROPHYLL A
lig 146	CLA	c	507	65	CHLOROPHYLL A
lig 147	CLA	c	508	64	CHLOROPHYLL A
lig 148	CLA	c	509	65	CHLOROPHYLL A
lig 149	CLA	c	510	65	CHLOROPHYLL A
lig 150	CLA	c	511	65	CHLOROPHYLL A
lig 151	CLA	c	512	65	CHLOROPHYLL A
lig 152	CLA	c	513	65	CHLOROPHYLL A
lig 153	BCR	c	514	40	BETA-CAROTENE
lig 154	BCR	c	515	40	BETA-CAROTENE
lig 155	BCR	c	516	40	BETA-CAROTENE
lig 156	DGD	c	517	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 157	DGD	c	518	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 158	DGD	c	519	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 159	LMG	c	520	37	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 160	STE	c	521	20	STEARIC ACID
lig 161	LMG	c	522	48	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 162	STE	c	523	12	STEARIC ACID
lig 163	LMG	c	524	49	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 164	PHO	d	401	64	PHEOPHYTIN A
lig 165	CLA	d	402	65	CHLOROPHYLL A
lig 166	CLA	d	403	65	CHLOROPHYLL A
lig 167	BCR	d	404	40	BETA-CAROTENE
lig 168	PL9	d	405	55	BENZOQUINONE
lig 169	LHG	d	406	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 170	LHG	d	407	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 171	LHG	d	408	39	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 172	LMG	d	409	23	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 173	LMG	d	410	44	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 174	STE	d	411	17	STEARIC ACID
lig 175	HEM	e	101	43	PROTOPORPHYRIN IX CONTAINING FE
lig 176	LHG	e	102	42	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 177	SQD	f	101	41	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 178	CLA	h	101	65	CHLOROPHYLL A
lig 179	DGD	h	102	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 180	STE	j	101	12	STEARIC ACID
lig 181	BCR	k	101	40	BETA-CAROTENE
lig 182	SQD	l	101	54	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 183	LHG	l	102	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 184	STE	l	103	18	STEARIC ACID
lig 185	LMG	m	101	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 186	STE	m	102	12	STEARIC ACID
lig 187	BCR	t	101	40	BETA-CAROTENE
lig 188	STE	t	102	14	STEARIC ACID
lig 189	STE	t	103	10	STEARIC ACID
lig 190	HEC	v	201	43	HEME C
lig 191	BCR	x	101	40	BETA-CAROTENE
lig 192	STE	x	102	20	STEARIC ACID

Analysis of Ligand-Protein Contacts in PDB entry: 8F4E

Analysis of Ligand-Protein Contacts in PDB entry:
8F4E