Analysis of Ligand-Protein Contacts in PDB entry:
8F4J


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 192 ligands in PDB entry 8F4J. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
I
1 10N-FORMYLMETHIONINE
lig 2
FME
M
1 10N-FORMYLMETHIONINE
lig 3
FME
T
1 10N-FORMYLMETHIONINE
lig 4
FME
i
1 10N-FORMYLMETHIONINE
lig 5
FME
m
1 10N-FORMYLMETHIONINE
lig 6
FME
t
1 10N-FORMYLMETHIONINE
lig 7
OEY
A
602 11CA-MN4-O6 CLUSTER
lig 8
FE2
A
603 1FE (II) ION
lig 9
CL
A
604 1CHLORIDE ION
lig 10
CL
A
605 1CHLORIDE ION
lig 11
CLA
A
606 65CHLOROPHYLL A
lig 12
CLA
A
607 65CHLOROPHYLL A
lig 13
PHO
A
608 64PHEOPHYTIN A
lig 14
CLA
A
609 54CHLOROPHYLL A
lig 15
BCR
A
610 40BETA-CAROTENE
lig 16
PL9
A
611 55 BENZOQUINONE
lig 17
CLA
A
612 65CHLOROPHYLL A
lig 18
LMG
A
613 481,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 19
LHG
A
614 471,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 20
SQD
A
615 52 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 21
SQD
A
616 39 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 22
DGD
A
617 66DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 23
CLA
B
601 65CHLOROPHYLL A
lig 24
CLA
B
602 65CHLOROPHYLL A
lig 25
CLA
B
603 65CHLOROPHYLL A
lig 26
CLA
B
604 65CHLOROPHYLL A
lig 27
CLA
B
605 65CHLOROPHYLL A
lig 28
CLA
B
606 65CHLOROPHYLL A
lig 29
CLA
B
607 65CHLOROPHYLL A
lig 30
CLA
B
608 65CHLOROPHYLL A
lig 31
CLA
B
609 65CHLOROPHYLL A
lig 32
CLA
B
610 65CHLOROPHYLL A
lig 33
CLA
B
611 65CHLOROPHYLL A
lig 34
CLA
B
612 65CHLOROPHYLL A
lig 35
CLA
B
613 65CHLOROPHYLL A
lig 36
CLA
B
614 65CHLOROPHYLL A
lig 37
CLA
B
615 65CHLOROPHYLL A
lig 38
CLA
B
616 60CHLOROPHYLL A
lig 39
BCR
B
617 40BETA-CAROTENE
lig 40
BCR
B
618 40BETA-CAROTENE
lig 41
BCR
B
619 40BETA-CAROTENE
lig 42
STE
B
620 17STEARIC ACID
lig 43
LMG
B
621 281,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 44
LHG
B
622 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 45
SQD
B
623 54 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 46
STE
B
624 12STEARIC ACID
lig 47
STE
B
625 12STEARIC ACID
lig 48
STE
B
626 16STEARIC ACID
lig 49
CLA
C
501 65CHLOROPHYLL A
lig 50
CLA
C
502 65CHLOROPHYLL A
lig 51
CLA
C
503 65CHLOROPHYLL A
lig 52
CLA
C
504 59CHLOROPHYLL A
lig 53
CLA
C
505 65CHLOROPHYLL A
lig 54
CLA
C
506 65CHLOROPHYLL A
lig 55
CLA
C
507 65CHLOROPHYLL A
lig 56
CLA
C
508 65CHLOROPHYLL A
lig 57
CLA
C
509 65CHLOROPHYLL A
lig 58
CLA
C
510 65CHLOROPHYLL A
lig 59
CLA
C
511 65CHLOROPHYLL A
lig 60
CLA
C
512 65CHLOROPHYLL A
lig 61
CLA
C
513 65CHLOROPHYLL A
lig 62
BCR
C
514 40BETA-CAROTENE
lig 63
DGD
C
515 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 64
DGD
C
516 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 65
DGD
C
517 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 66
LMG
C
518 481,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 67
STE
C
519 12STEARIC ACID
lig 68
STE
C
520 12STEARIC ACID
lig 69
STE
C
521 16STEARIC ACID
lig 70
BCT
D
401 4BICARBONATE ION
lig 71
PHO
D
402 64PHEOPHYTIN A
lig 72
CLA
D
403 65CHLOROPHYLL A
lig 73
CLA
D
404 65CHLOROPHYLL A
lig 74
BCR
D
405 40BETA-CAROTENE
lig 75
PL9
D
406 55 BENZOQUINONE
lig 76
LMG
D
407 511,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 77
LHG
D
408 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 78
LMG
D
409 331,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 79
LHG
E
101 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 80
STE
E
102 12STEARIC ACID
lig 81
HEM
F
101 43PROTOPORPHYRIN IX CONTAINING FE
lig 82
SQD
F
102 36 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 83
BCR
H
101 40BETA-CAROTENE
lig 84
DGD
H
102 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 85
STE
H
103 18STEARIC ACID
lig 86
STE
I
101 15STEARIC ACID
lig 87
STE
J
101 12STEARIC ACID
lig 88
BCR
K
101 40BETA-CAROTENE
lig 89
BCR
K
102 40BETA-CAROTENE
lig 90
BCR
K
103 40BETA-CAROTENE
lig 91
LHG
L
101 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 92
LMG
M
101 511,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 93
STE
M
102 15STEARIC ACID
lig 94
STE
M
103 10STEARIC ACID
lig 95
BCR
T
101 40BETA-CAROTENE
lig 96
HEC
V
201 43HEME C
lig 97
STE
X
101 20STEARIC ACID
lig 98
OEY
a
602 11CA-MN4-O6 CLUSTER
lig 99
FE2
a
603 1FE (II) ION
lig 100
CL
a
604 1CHLORIDE ION
lig 101
CL
a
605 1CHLORIDE ION
lig 102
BCT
a
606 4BICARBONATE ION
lig 103
CLA
a
607 65CHLOROPHYLL A
lig 104
CLA
a
608 65CHLOROPHYLL A
lig 105
PHO
a
609 64PHEOPHYTIN A
lig 106
CLA
a
610 65CHLOROPHYLL A
lig 107
BCR
a
611 40BETA-CAROTENE
lig 108
PL9
a
612 55 BENZOQUINONE
lig 109
CLA
a
613 65CHLOROPHYLL A
lig 110
LHG
a
614 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 111
SQD
a
615 54 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 112
SQD
a
616 36 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 113
DGD
a
617 44DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 114
STE
a
618 12STEARIC ACID
lig 115
CLA
b
601 65CHLOROPHYLL A
lig 116
CLA
b
602 65CHLOROPHYLL A
lig 117
CLA
b
603 65CHLOROPHYLL A
lig 118
CLA
b
604 65CHLOROPHYLL A
lig 119
CLA
b
605 65CHLOROPHYLL A
lig 120
CLA
b
606 65CHLOROPHYLL A
lig 121
CLA
b
607 65CHLOROPHYLL A
lig 122
CLA
b
608 65CHLOROPHYLL A
lig 123
CLA
b
609 65CHLOROPHYLL A
lig 124
CLA
b
610 65CHLOROPHYLL A
lig 125
CLA
b
611 65CHLOROPHYLL A
lig 126
CLA
b
612 65CHLOROPHYLL A
lig 127
CLA
b
613 65CHLOROPHYLL A
lig 128
CLA
b
614 65CHLOROPHYLL A
lig 129
CLA
b
615 60CHLOROPHYLL A
lig 130
BCR
b
616 40BETA-CAROTENE
lig 131
BCR
b
617 40BETA-CAROTENE
lig 132
BCR
b
618 40BETA-CAROTENE
lig 133
SQD
b
619 49 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 134
STE
b
620 16STEARIC ACID
lig 135
STE
b
621 20STEARIC ACID
lig 136
LMG
b
622 551,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 137
STE
b
623 16STEARIC ACID
lig 138
STE
b
624 15STEARIC ACID
lig 139
STE
b
625 20STEARIC ACID
lig 140
STE
b
626 10STEARIC ACID
lig 141
CLA
c
501 65CHLOROPHYLL A
lig 142
CLA
c
502 65CHLOROPHYLL A
lig 143
CLA
c
503 65CHLOROPHYLL A
lig 144
CLA
c
504 60CHLOROPHYLL A
lig 145
CLA
c
505 65CHLOROPHYLL A
lig 146
CLA
c
506 65CHLOROPHYLL A
lig 147
CLA
c
507 65CHLOROPHYLL A
lig 148
CLA
c
508 64CHLOROPHYLL A
lig 149
CLA
c
509 65CHLOROPHYLL A
lig 150
CLA
c
510 65CHLOROPHYLL A
lig 151
CLA
c
511 65CHLOROPHYLL A
lig 152
CLA
c
512 65CHLOROPHYLL A
lig 153
CLA
c
513 65CHLOROPHYLL A
lig 154
BCR
c
514 40BETA-CAROTENE
lig 155
BCR
c
515 40BETA-CAROTENE
lig 156
DGD
c
516 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 157
DGD
c
517 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 158
DGD
c
518 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 159
LMG
c
519 371,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 160
STE
c
520 20STEARIC ACID
lig 161
LMG
c
521 481,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 162
LMG
c
522 491,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 163
PHO
d
401 64PHEOPHYTIN A
lig 164
CLA
d
402 65CHLOROPHYLL A
lig 165
CLA
d
403 65CHLOROPHYLL A
lig 166
BCR
d
404 40BETA-CAROTENE
lig 167
PL9
d
405 55 BENZOQUINONE
lig 168
LHG
d
406 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 169
LHG
d
407 391,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 170
LMG
d
408 231,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 171
LMG
d
409 441,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 172
STE
d
410 17STEARIC ACID
lig 173
HEM
e
101 43PROTOPORPHYRIN IX CONTAINING FE
lig 174
LHG
e
102 421,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 175
SQD
f
101 41 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 176
CLA
h
101 65CHLOROPHYLL A
lig 177
BCR
h
102 40BETA-CAROTENE
lig 178
DGD
h
103 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 179
STE
j
101 12STEARIC ACID
lig 180
BCR
k
101 40BETA-CAROTENE
lig 181
BCR
k
102 40BETA-CAROTENE
lig 182
STE
k
103 12STEARIC ACID
lig 183
LHG
l
101 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 184
STE
l
102 18STEARIC ACID
lig 185
LMG
m
101 511,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 186
STE
m
102 12STEARIC ACID
lig 187
BCR
t
101 40BETA-CAROTENE
lig 188
STE
t
102 14STEARIC ACID
lig 189
STE
t
103 10STEARIC ACID
lig 190
STE
t
104 18STEARIC ACID
lig 191
HEC
v
201 43HEME C
lig 192
STE
x
101 20STEARIC ACID