Analysis of Ligand-Protein Contacts in PDB entry:
8GQP


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 120 ligands in PDB entry 8GQP. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
DLE
A
1 8D-LEUCINE
lig 2
DPR
A
2 7D-PROLINE
lig 3
DVA
A
3 7D-VALINE
lig 4
DGL
A
4 9D-GLUTAMIC ACID
lig 5
DLY
A
5 9D-LYSINE
lig 6
DIL
A
6 8D-ISOLEUCINE
lig 7
DIL
A
7 8D-ISOLEUCINE
lig 8
DAR
A
8 11D-ARGININE
lig 9
DGL
A
9 9D-GLUTAMIC ACID
lig 10
DAL
A
10 5D-ALANINE
lig 11
DLY
A
11 9D-LYSINE
lig 12
DLY
A
12 9D-LYSINE
lig 13
DIL
A
13 8D-ISOLEUCINE
lig 14
DLE
A
14 8D-LEUCINE
lig 15
DAS
A
15 8D-ASPARTIC ACID
lig 16
DGL
A
16 9D-GLUTAMIC ACID
lig 17
DLE
A
17 8D-LEUCINE
lig 18
DLE
A
18 8D-LEUCINE
lig 19
DLY
A
19 9D-LYSINE
lig 20
DAR
A
20 11D-ARGININE
lig 21
DLE
A
22 8D-LEUCINE
lig 22
DIL
A
23 8D-ISOLEUCINE
lig 23
DAS
A
24 8D-ASPARTIC ACID
lig 24
DPR
A
25 7D-PROLINE
lig 25
DGL
A
26 9D-GLUTAMIC ACID
lig 26
DLE
A
27 8D-LEUCINE
lig 27
DAL
A
28 5D-ALANINE
lig 28
DAR
A
29 11D-ARGININE
lig 29
DIL
A
30 8D-ISOLEUCINE
lig 30
DAL
A
31 5D-ALANINE
lig 31
DAR
A
32 11D-ARGININE
lig 32
DGL
A
33 9D-GLUTAMIC ACID
lig 33
DVA
A
34 7D-VALINE
lig 34
DLE
A
35 8D-LEUCINE
lig 35
DGL
A
36 9D-GLUTAMIC ACID
lig 36
DAR
A
37 11D-ARGININE
lig 37
DAL
A
38 5D-ALANINE
lig 38
DAR
A
39 11D-ARGININE
lig 39
DLY
A
40 9D-LYSINE
lig 40
DLE
A
41 8D-LEUCINE
lig 41
DSG
A
43 8D-ASPARAGINE
lig 42
DGL
A
44 9D-GLUTAMIC ACID
lig 43
DGL
A
45 9D-GLUTAMIC ACID
lig 44
DAL
A
46 5D-ALANINE
lig 45
DAL
A
47 5D-ALANINE
lig 46
DAR
A
48 11D-ARGININE
lig 47
DPN
A
49 11D-PHENYLALANINE
lig 48
DVA
A
50 7D-VALINE
lig 49
DLE
A
51 8D-LEUCINE
lig 50
DGL
A
52 9D-GLUTAMIC ACID
lig 51
DLE
A
53 8D-LEUCINE
lig 52
DIL
A
54 8D-ISOLEUCINE
lig 53
DGL
A
55 9D-GLUTAMIC ACID
lig 54
DAR
A
56 11D-ARGININE
lig 55
DLE
A
57 8D-LEUCINE
lig 56
DAR
A
58 11D-ARGININE
lig 57
DAR
A
59 11D-ARGININE
lig 58
DGL
A
60 9D-GLUTAMIC ACID
lig 59
DLE
A
61 8D-LEUCINE
lig 60
DSN
A
62 7D-SERINE
lig 61
DLE
C
1 8D-LEUCINE
lig 62
DPR
C
2 7D-PROLINE
lig 63
DVA
C
3 7D-VALINE
lig 64
DGL
C
4 9D-GLUTAMIC ACID
lig 65
DLY
C
5 9D-LYSINE
lig 66
DIL
C
6 8D-ISOLEUCINE
lig 67
DIL
C
7 8D-ISOLEUCINE
lig 68
DAR
C
8 11D-ARGININE
lig 69
DGL
C
9 9D-GLUTAMIC ACID
lig 70
DAL
C
10 5D-ALANINE
lig 71
DLY
C
11 9D-LYSINE
lig 72
DLY
C
12 9D-LYSINE
lig 73
DIL
C
13 8D-ISOLEUCINE
lig 74
DLE
C
14 8D-LEUCINE
lig 75
DAS
C
15 8D-ASPARTIC ACID
lig 76
DGL
C
16 9D-GLUTAMIC ACID
lig 77
DLE
C
17 8D-LEUCINE
lig 78
DLE
C
18 8D-LEUCINE
lig 79
DLY
C
19 9D-LYSINE
lig 80
DAR
C
20 11D-ARGININE
lig 81
DLE
C
22 8D-LEUCINE
lig 82
DIL
C
23 8D-ISOLEUCINE
lig 83
DAS
C
24 8D-ASPARTIC ACID
lig 84
DPR
C
25 7D-PROLINE
lig 85
DGL
C
26 9D-GLUTAMIC ACID
lig 86
DLE
C
27 8D-LEUCINE
lig 87
DAL
C
28 5D-ALANINE
lig 88
DAR
C
29 11D-ARGININE
lig 89
DIL
C
30 8D-ISOLEUCINE
lig 90
DAL
C
31 5D-ALANINE
lig 91
DAR
C
32 11D-ARGININE
lig 92
DGL
C
33 9D-GLUTAMIC ACID
lig 93
DVA
C
34 7D-VALINE
lig 94
DLE
C
35 8D-LEUCINE
lig 95
DGL
C
36 9D-GLUTAMIC ACID
lig 96
DAR
C
37 11D-ARGININE
lig 97
DAL
C
38 5D-ALANINE
lig 98
DAR
C
39 11D-ARGININE
lig 99
DLY
C
40 9D-LYSINE
lig 100
DLE
C
41 8D-LEUCINE
lig 101
DSG
C
43 8D-ASPARAGINE
lig 102
DGL
C
44 9D-GLUTAMIC ACID
lig 103
DGL
C
45 9D-GLUTAMIC ACID
lig 104
DAL
C
46 5D-ALANINE
lig 105
DAL
C
47 5D-ALANINE
lig 106
DAR
C
48 11D-ARGININE
lig 107
DPN
C
49 11D-PHENYLALANINE
lig 108
DVA
C
50 7D-VALINE
lig 109
DLE
C
51 8D-LEUCINE
lig 110
DGL
C
52 9D-GLUTAMIC ACID
lig 111
DLE
C
53 8D-LEUCINE
lig 112
DIL
C
54 8D-ISOLEUCINE
lig 113
DGL
C
55 9D-GLUTAMIC ACID
lig 114
DAR
C
56 11D-ARGININE
lig 115
DLE
C
57 8D-LEUCINE
lig 116
DAR
C
58 11D-ARGININE
lig 117
DAR
C
59 11D-ARGININE
lig 118
DGL
C
60 9D-GLUTAMIC ACID
lig 119
DLE
C
61 8D-LEUCINE
lig 120
DSN
C
62 7D-SERINE