Analysis of Ligand-Protein Contacts in PDB entry:
8J6Z


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 264 ligands in PDB entry 8J6Z. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
TPO
z
3 11PHOSPHOTHREONINE
lig 2
CHL
1
601 52CHLOROPHYLL B
lig 3
CLA
1
602 54CHLOROPHYLL A
lig 4
CLA
1
603 54CHLOROPHYLL A
lig 5
CLA
1
604 49CHLOROPHYLL A
lig 6
CLA
1
605 46CHLOROPHYLL A
lig 7
CHL
1
606 41CHLOROPHYLL B
lig 8
CLA
1
607 44CHLOROPHYLL A
lig 9
CLA
1
608 40CHLOROPHYLL A
lig 10
CLA
1
609 42CHLOROPHYLL A
lig 11
CLA
1
610 38CHLOROPHYLL A
lig 12
CLA
1
611 45CHLOROPHYLL A
lig 13
CLA
1
612 46CHLOROPHYLL A
lig 14
CLA
1
613 38CHLOROPHYLL A
lig 15
XAT
1
614 44 TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
lig 16
LHG
1
615 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 17
LUT
1
616 42 CAROTENE-3,3'-DIOL
lig 18
CLA
2
602 65CHLOROPHYLL A
lig 19
CLA
2
603 44CHLOROPHYLL A
lig 20
CLA
2
604 43CHLOROPHYLL A
lig 21
CHL
2
605 42CHLOROPHYLL B
lig 22
CHL
2
606 43CHLOROPHYLL B
lig 23
CHL
2
601 47CHLOROPHYLL B
lig 24
CLA
2
610 38CHLOROPHYLL A
lig 25
CHL
2
607 51CHLOROPHYLL B
lig 26
CLA
2
612 65CHLOROPHYLL A
lig 27
CLA
2
611 44CHLOROPHYLL A
lig 28
LUT
2
619 42 CAROTENE-3,3'-DIOL
lig 29
CHL
2
615 43CHLOROPHYLL B
lig 30
LUT
2
616 42 CAROTENE-3,3'-DIOL
lig 31
CLA
2
608 45CHLOROPHYLL A
lig 32
XAT
2
617 44 TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
lig 33
CLA
2
609 47CHLOROPHYLL A
lig 34
CLA
2
613 43CHLOROPHYLL A
lig 35
LHG
2
618 371,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 36
CLA
3
601 60CHLOROPHYLL A
lig 37
CLA
3
611 36CHLOROPHYLL A
lig 38
CLA
3
605 41CHLOROPHYLL A
lig 39
CLA
3
607 45CHLOROPHYLL A
lig 40
CLA
3
610 40CHLOROPHYLL A
lig 41
CLA
3
603 45CHLOROPHYLL A
lig 42
CHL
3
606 45CHLOROPHYLL B
lig 43
CLA
3
604 41CHLOROPHYLL A
lig 44
LUT
3
613 42 CAROTENE-3,3'-DIOL
lig 45
CLA
3
612 40CHLOROPHYLL A
lig 46
BCR
3
614 40BETA-CAROTENE
lig 47
CLA
3
602 55CHLOROPHYLL A
lig 48
CLA
3
609 54CHLOROPHYLL A
lig 49
CLA
3
608 41CHLOROPHYLL A
lig 50
CHL
4
605 41CHLOROPHYLL B
lig 51
CHL
4
606 41CHLOROPHYLL B
lig 52
LUT
4
616 42 CAROTENE-3,3'-DIOL
lig 53
CLA
4
613 45CHLOROPHYLL A
lig 54
XAT
4
617 44 TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
lig 55
CLA
4
609 54CHLOROPHYLL A
lig 56
CLA
4
608 45CHLOROPHYLL A
lig 57
CHL
4
615 41CHLOROPHYLL B
lig 58
CLA
4
603 44CHLOROPHYLL A
lig 59
CLA
4
611 41CHLOROPHYLL A
lig 60
BCR
4
618 40BETA-CAROTENE
lig 61
CLA
4
612 57CHLOROPHYLL A
lig 62
LMG
4
619 391,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 63
CLA
4
601 46CHLOROPHYLL A
lig 64
CLA
4
602 60CHLOROPHYLL A
lig 65
CLA
4
610 42CHLOROPHYLL A
lig 66
CLA
4
614 50CHLOROPHYLL A
lig 67
LMG
4
620 331,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 68
CHL
4
607 46CHLOROPHYLL B
lig 69
CLA
4
604 43CHLOROPHYLL A
lig 70
CLA
A
803 65CHLOROPHYLL A
lig 71
CLA
A
811 65CHLOROPHYLL A
lig 72
CLA
A
810 50CHLOROPHYLL A
lig 73
CLA
A
812 65CHLOROPHYLL A
lig 74
CLA
A
813 54CHLOROPHYLL A
lig 75
CLA
A
826 65CHLOROPHYLL A
lig 76
CLA
A
829 65CHLOROPHYLL A
lig 77
CLA
A
830 65CHLOROPHYLL A
lig 78
CLA
A
831 65CHLOROPHYLL A
lig 79
CLA
A
818 60CHLOROPHYLL A
lig 80
CLA
A
808 50CHLOROPHYLL A
lig 81
CLA
A
809 65CHLOROPHYLL A
lig 82
CLA
A
807 65CHLOROPHYLL A
lig 83
CLA
A
820 65CHLOROPHYLL A
lig 84
CLA
A
802 65CHLOROPHYLL A
lig 85
CLA
A
804 65CHLOROPHYLL A
lig 86
CLA
A
823 42CHLOROPHYLL A
lig 87
CLA
A
824 41CHLOROPHYLL A
lig 88
CLA
A
827 59CHLOROPHYLL A
lig 89
CLA
A
828 65CHLOROPHYLL A
lig 90
CLA
A
825 55CHLOROPHYLL A
lig 91
CLA
A
805 52CHLOROPHYLL A
lig 92
CLA
A
815 45CHLOROPHYLL A
lig 93
CLA
A
816 42CHLOROPHYLL A
lig 94
CLA
A
814 65CHLOROPHYLL A
lig 95
CLA
A
819 59CHLOROPHYLL A
lig 96
CLA
A
806 65CHLOROPHYLL A
lig 97
CL0
A
801 61CHLOROPHYLL A ISOMER
lig 98
CLA
A
817 45CHLOROPHYLL A
lig 99
CLA
A
821 45CHLOROPHYLL A
lig 100
CLA
A
822 65CHLOROPHYLL A
lig 101
BCR
A
853 40BETA-CAROTENE
lig 102
CLA
A
841 65CHLOROPHYLL A
lig 103
BCR
A
852 40BETA-CAROTENE
lig 104
CLA
A
832 50CHLOROPHYLL A
lig 105
BCR
A
848 40BETA-CAROTENE
lig 106
BCR
A
850 40BETA-CAROTENE
lig 107
CLA
A
838 51CHLOROPHYLL A
lig 108
CLA
A
834 65CHLOROPHYLL A
lig 109
CLA
A
833 56CHLOROPHYLL A
lig 110
BCR
A
851 40BETA-CAROTENE
lig 111
BCR
A
849 40BETA-CAROTENE
lig 112
CLA
A
842 65CHLOROPHYLL A
lig 113
CLA
A
844 65CHLOROPHYLL A
lig 114
CLA
A
835 65CHLOROPHYLL A
lig 115
CLA
A
837 45CHLOROPHYLL A
lig 116
LHG
A
847 301,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 117
CLA
A
845 50CHLOROPHYLL A
lig 118
SF4
A
854 8IRON/SULFUR CLUSTER
lig 119
PQN
A
855 33PHYLLOQUINONE
lig 120
CLA
A
836 45CHLOROPHYLL A
lig 121
CLA
A
840 52CHLOROPHYLL A
lig 122
LHG
A
846 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 123
CLA
A
843 65CHLOROPHYLL A
lig 124
CLA
A
839 55CHLOROPHYLL A
lig 125
CLA
B
816 55CHLOROPHYLL A
lig 126
CLA
B
806 65CHLOROPHYLL A
lig 127
CLA
B
820 50CHLOROPHYLL A
lig 128
CLA
B
804 41CHLOROPHYLL A
lig 129
CLA
B
808 65CHLOROPHYLL A
lig 130
CLA
B
822 65CHLOROPHYLL A
lig 131
CLA
B
817 59CHLOROPHYLL A
lig 132
CLA
B
828 65CHLOROPHYLL A
lig 133
CLA
B
829 56CHLOROPHYLL A
lig 134
CLA
B
830 43CHLOROPHYLL A
lig 135
CLA
B
824 65CHLOROPHYLL A
lig 136
BCR
B
801 40BETA-CAROTENE
lig 137
CLA
B
837 65CHLOROPHYLL A
lig 138
CLA
B
815 43CHLOROPHYLL A
lig 139
PQN
B
842 33PHYLLOQUINONE
lig 140
BCR
B
843 40BETA-CAROTENE
lig 141
CLA
B
811 54CHLOROPHYLL A
lig 142
CLA
B
823 45CHLOROPHYLL A
lig 143
CLA
B
826 62CHLOROPHYLL A
lig 144
CLA
B
836 50CHLOROPHYLL A
lig 145
CLA
B
838 47CHLOROPHYLL A
lig 146
CLA
B
840 65CHLOROPHYLL A
lig 147
CLA
B
807 52CHLOROPHYLL A
lig 148
CLA
B
841 65CHLOROPHYLL A
lig 149
CLA
B
835 42CHLOROPHYLL A
lig 150
CLA
B
821 47CHLOROPHYLL A
lig 151
CLA
B
825 62CHLOROPHYLL A
lig 152
CLA
B
814 65CHLOROPHYLL A
lig 153
CLA
B
832 65CHLOROPHYLL A
lig 154
CLA
B
833 45CHLOROPHYLL A
lig 155
CLA
B
809 65CHLOROPHYLL A
lig 156
CLA
B
819 55CHLOROPHYLL A
lig 157
BCR
B
844 40BETA-CAROTENE
lig 158
BCR
B
845 40BETA-CAROTENE
lig 159
BCR
B
846 40BETA-CAROTENE
lig 160
CLA
B
818 60CHLOROPHYLL A
lig 161
BCR
B
847 40BETA-CAROTENE
lig 162
BCR
B
849 40BETA-CAROTENE
lig 163
DGD
B
850 66DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 164
CLA
B
827 65CHLOROPHYLL A
lig 165
LHG
B
851 381,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 166
LHG
B
852 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 167
CLA
B
802 65CHLOROPHYLL A
lig 168
CLA
B
805 65CHLOROPHYLL A
lig 169
CLA
B
810 65CHLOROPHYLL A
lig 170
CLA
B
831 43CHLOROPHYLL A
lig 171
CLA
B
839 65CHLOROPHYLL A
lig 172
CLA
B
813 65CHLOROPHYLL A
lig 173
CLA
B
834 60CHLOROPHYLL A
lig 174
BCR
B
848 40BETA-CAROTENE
lig 175
CLA
B
812 43CHLOROPHYLL A
lig 176
CLA
B
803 65CHLOROPHYLL A
lig 177
SF4
C
101 8IRON/SULFUR CLUSTER
lig 178
SF4
C
102 8IRON/SULFUR CLUSTER
lig 179
CLA
F
302 51CHLOROPHYLL A
lig 180
CLA
F
303 41CHLOROPHYLL A
lig 181
CLA
F
301 57CHLOROPHYLL A
lig 182
BCR
F
304 40BETA-CAROTENE
lig 183
CLA
G
203 45CHLOROPHYLL A
lig 184
CLA
G
202 42CHLOROPHYLL A
lig 185
BCR
G
204 40BETA-CAROTENE
lig 186
CLA
G
201 45CHLOROPHYLL A
lig 187
CLA
H
201 60CHLOROPHYLL A
lig 188
BCR
I
101 40BETA-CAROTENE
lig 189
BCR
J
102 40BETA-CAROTENE
lig 190
CLA
J
101 51CHLOROPHYLL A
lig 191
BCR
K
205 40BETA-CAROTENE
lig 192
CLA
K
201 37CHLOROPHYLL A
lig 193
CLA
K
204 46CHLOROPHYLL A
lig 194
BCR
K
202 40BETA-CAROTENE
lig 195
CLA
K
206 39CHLOROPHYLL A
lig 196
CLA
K
203 45CHLOROPHYLL A
lig 197
CLA
L
302 45CHLOROPHYLL A
lig 198
CLA
L
303 65CHLOROPHYLL A
lig 199
CLA
L
304 45CHLOROPHYLL A
lig 200
BCR
L
301 40BETA-CAROTENE
lig 201
BCR
L
306 40BETA-CAROTENE
lig 202
BCR
L
305 40BETA-CAROTENE
lig 203
CLA
O
203 38CHLOROPHYLL A
lig 204
CLA
O
202 38CHLOROPHYLL A
lig 205
BCR
O
205 40BETA-CAROTENE
lig 206
BCR
O
204 40BETA-CAROTENE
lig 207
CLA
O
201 65CHLOROPHYLL A
lig 208
CHL
x
608 42CHLOROPHYLL B
lig 209
CHL
x
606 46CHLOROPHYLL B
lig 210
CHL
x
607 53CHLOROPHYLL B
lig 211
LUT
x
616 42 CAROTENE-3,3'-DIOL
lig 212
CLA
x
610 65CHLOROPHYLL A
lig 213
CHL
x
609 46CHLOROPHYLL B
lig 214
LUT
x
615 42 CAROTENE-3,3'-DIOL
lig 215
CLA
x
604 52CHLOROPHYLL A
lig 216
CLA
x
612 45CHLOROPHYLL A
lig 217
CHL
x
601 53CHLOROPHYLL B
lig 218
CLA
x
602 65CHLOROPHYLL A
lig 219
CHL
x
605 53CHLOROPHYLL B
lig 220
CLA
x
611 45CHLOROPHYLL A
lig 221
CLA
x
613 59CHLOROPHYLL A
lig 222
CLA
x
614 45CHLOROPHYLL A
lig 223
XAT
x
617 44 TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
lig 224
NEX
x
618 44 DIOL
lig 225
LHG
x
619 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 226
CLA
x
603 60CHLOROPHYLL A
lig 227
CLA
y
603 53CHLOROPHYLL A
lig 228
CHL
y
607 53CHLOROPHYLL B
lig 229
CLA
y
610 58CHLOROPHYLL A
lig 230
CHL
y
606 46CHLOROPHYLL B
lig 231
CHL
y
601 53CHLOROPHYLL B
lig 232
CLA
y
613 45CHLOROPHYLL A
lig 233
LUT
y
616 42 CAROTENE-3,3'-DIOL
lig 234
CLA
y
612 45CHLOROPHYLL A
lig 235
CLA
y
602 65CHLOROPHYLL A
lig 236
CLA
y
604 51CHLOROPHYLL A
lig 237
CHL
y
605 42CHLOROPHYLL B
lig 238
CLA
y
614 65CHLOROPHYLL A
lig 239
LUT
y
615 42 CAROTENE-3,3'-DIOL
lig 240
XAT
y
617 44 TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
lig 241
NEX
y
618 44 DIOL
lig 242
LHG
y
619 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 243
CHL
y
608 49CHLOROPHYLL B
lig 244
CHL
y
609 53CHLOROPHYLL B
lig 245
CLA
y
611 45CHLOROPHYLL A
lig 246
CLA
z
602 65CHLOROPHYLL A
lig 247
CLA
z
614 65CHLOROPHYLL A
lig 248
CLA
z
612 45CHLOROPHYLL A
lig 249
CLA
z
613 65CHLOROPHYLL A
lig 250
CLA
z
604 51CHLOROPHYLL A
lig 251
CHL
z
606 46CHLOROPHYLL B
lig 252
LUT
z
615 42 CAROTENE-3,3'-DIOL
lig 253
CHL
z
609 53CHLOROPHYLL B
lig 254
CHL
z
608 49CHLOROPHYLL B
lig 255
XAT
z
617 44 TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
lig 256
CHL
z
601 53CHLOROPHYLL B
lig 257
CLA
z
611 45CHLOROPHYLL A
lig 258
CLA
z
610 45CHLOROPHYLL A
lig 259
LHG
z
619 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 260
CHL
z
605 42CHLOROPHYLL B
lig 261
LUT
z
616 42 CAROTENE-3,3'-DIOL
lig 262
CLA
z
603 57CHLOROPHYLL A
lig 263
NEX
z
618 44 DIOL
lig 264
CHL
z
607 52CHLOROPHYLL B