Analysis of Ligand-Protein Contacts in PDB entry:
8OM1


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 72 ligands in PDB entry 8OM1. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
A
1 10N-FORMYLMETHIONINE
lig 2
WYK
B
87 12(2S,4S)-4-HYDROXY-L-ARGININE
lig 3
2MR
D
85 13N3, N4-DIMETHYLARGININE
lig 4
FME
H
1 10N-FORMYLMETHIONINE
lig 5
FME
J
1 10N-FORMYLMETHIONINE
lig 6
FME
K
1 10N-FORMYLMETHIONINE
lig 7
FME
L
1 10N-FORMYLMETHIONINE
lig 8
FME
M
1 10N-FORMYLMETHIONINE
lig 9
FME
N
1 10N-FORMYLMETHIONINE
lig 10
SAC
i
1 9N-ACETYL-SERINE
lig 11
AME
q
1 11N-ACETYLMETHIONINE
lig 12
AYA
r
1 8N-ACETYLALANINE
lig 13
LMT
A
201 35DODECYL-BETA-D-MALTOSIDE
lig 14
LMT
A
202 35DODECYL-BETA-D-MALTOSIDE
lig 15
PC1
A
203 341,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 16
SF4
B
201 8IRON/SULFUR CLUSTER
lig 17
PC1
B
203 431,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 18
PC1
B
204 521,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 19
FES
E
301 4FE2/S2 (INORGANIC) CLUSTER
lig 20
SF4
F
501 8IRON/SULFUR CLUSTER
lig 21
FMN
F
502 31FLAVIN MONONUCLEOTIDE
lig 22
SF4
G
801 8IRON/SULFUR CLUSTER
lig 23
SF4
G
802 8IRON/SULFUR CLUSTER
lig 24
FES
G
803 4FE2/S2 (INORGANIC) CLUSTER
lig 25
NA
G
804 1SODIUM ION
lig 26
CDL
H
401 51CARDIOLIPIN
lig 27
LMT
H
402 35DODECYL-BETA-D-MALTOSIDE
lig 28
SF4
I
201 8IRON/SULFUR CLUSTER
lig 29
SF4
I
202 8IRON/SULFUR CLUSTER
lig 30
3PE
I
203 361,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 31
3PE
I
204 441,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 32
LMT
J
201 35DODECYL-BETA-D-MALTOSIDE
lig 33
LMT
J
202 35DODECYL-BETA-D-MALTOSIDE
lig 34
CDL
K
101 71CARDIOLIPIN
lig 35
LMT
L
701 35DODECYL-BETA-D-MALTOSIDE
lig 36
3PE
L
702 431,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 37
CDL
L
703 68CARDIOLIPIN
lig 38
LMT
L
704 35DODECYL-BETA-D-MALTOSIDE
lig 39
LMT
L
705 35DODECYL-BETA-D-MALTOSIDE
lig 40
3PE
L
706 451,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 41
PC1
L
707 271,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 42
3PE
M
501 411,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 43
LMT
M
502 35DODECYL-BETA-D-MALTOSIDE
lig 44
LMT
N
401 35DODECYL-BETA-D-MALTOSIDE
lig 45
3PE
N
402 341,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 46
3PE
N
403 381,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 47
LMT
N
404 35DODECYL-BETA-D-MALTOSIDE
lig 48
MG
O
501 1MAGNESIUM ION
lig 49
DGT
O
502 312'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
lig 50
3PE
O
503 301,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 51
NDP
P
501 48 PHOSPHATE
lig 52
ZN
R
201 1ZINC ION
lig 53
EHZ
T
201 37 (3~{S})-3-OXIDANYLTETRADECANETHIOATE
lig 54
EHZ
U
201 37 (3~{S})-3-OXIDANYLTETRADECANETHIOATE
lig 55
3PE
X
201 371,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 56
LMT
Y
201 35DODECYL-BETA-D-MALTOSIDE
lig 57
LMT
Y
202 35DODECYL-BETA-D-MALTOSIDE
lig 58
3PE
Y
203 381,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 59
LMT
Y
204 35DODECYL-BETA-D-MALTOSIDE
lig 60
3PE
Z
201 431,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 61
3PE
d
201 431,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 62
3PE
d
202 321,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 63
3PE
f
101 421,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 64
CDL
h
201 58CARDIOLIPIN
lig 65
CDL
h
202 78CARDIOLIPIN
lig 66
LMT
h
203 35DODECYL-BETA-D-MALTOSIDE
lig 67
3PE
i
201 301,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 68
LMT
j
101 35DODECYL-BETA-D-MALTOSIDE
lig 69
MYR
o
201 15MYRISTIC ACID
lig 70
PC1
p
302 361,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 71
CDL
q
201 62CARDIOLIPIN
lig 72
3PE
r
201 461,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI