Analysis of Ligand-Protein Contacts in PDB entry:
8OVD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 86 ligands in PDB entry 8OVD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
HEC
O
301 43HEME C
lig 2
HEC
O
302 43HEME C
lig 3
MQ9
O
303 58MENAQUINONE-9
lig 4
WUO
O
304 97ACYL-PHOSPHATIDYL-MYO-INOSITOL DIMANNOSIDE
lig 5
FES
M
501 4FE2/S2 (INORGANIC) CLUSTER
lig 6
IZL
M
502 114 (10~{R})-10-METHYLDODECANOATE
lig 7
9YF
M
503 58 9-METHYLOCTADECANOATE
lig 8
7PH
M
504 38 TETRADECANOATE
lig 9
MQ9
M
505 58MENAQUINONE-9
lig 10
HEM
N
601 43PROTOPORPHYRIN IX CONTAINING FE
lig 11
CDL
N
602 74CARDIOLIPIN
lig 12
CDL
N
603 77CARDIOLIPIN
lig 13
CDL
N
604 79CARDIOLIPIN
lig 14
MQ9
N
605 43MENAQUINONE-9
lig 15
MQ9
N
606 58MENAQUINONE-9
lig 16
HEM
N
607 43PROTOPORPHYRIN IX CONTAINING FE
lig 17
MQ9
N
608 58MENAQUINONE-9
lig 18
7PH
N
609 38 TETRADECANOATE
lig 19
CDL
P
301 77CARDIOLIPIN
lig 20
WUO
P
302 97ACYL-PHOSPHATIDYL-MYO-INOSITOL DIMANNOSIDE
lig 21
7PH
S
501 38 TETRADECANOATE
lig 22
TRD
S
502 13TRIDECANE
lig 23
3PE
S
503 321,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 24
MQ9
T
1301 58MENAQUINONE-9
lig 25
CDL
T
1302 79CARDIOLIPIN
lig 26
TRD
T
1303 13TRIDECANE
lig 27
CDL
R
601 77CARDIOLIPIN
lig 28
HEA
R
602 60HEME-A
lig 29
HEA
R
603 60HEME-A
lig 30
CU
R
604 1COPPER (II) ION
lig 31
CDL
R
605 77CARDIOLIPIN
lig 32
MG
R
606 1MAGNESIUM ION
lig 33
CA
R
607 1CALCIUM ION
lig 34
TRD
R
608 13TRIDECANE
lig 35
TRD
R
609 13TRIDECANE
lig 36
CU
Q
401 1COPPER (II) ION
lig 37
CU
Q
402 1COPPER (II) ION
lig 38
TRD
Q
403 13TRIDECANE
lig 39
9YF
W
201 58 9-METHYLOCTADECANOATE
lig 40
9XX
W
202 42 METHYLOCTADECANOATE
lig 41
PLM
W
203 11PALMITIC ACID
lig 42
PLM
Y
301 11PALMITIC ACID
lig 43
9XX
Y
302 32 METHYLOCTADECANOATE
lig 44
HEC
C
301 43HEME C
lig 45
HEC
C
302 43HEME C
lig 46
MQ9
C
303 58MENAQUINONE-9
lig 47
WUO
C
304 97ACYL-PHOSPHATIDYL-MYO-INOSITOL DIMANNOSIDE
lig 48
CDL
C
305 79CARDIOLIPIN
lig 49
MQ9
G
901 58MENAQUINONE-9
lig 50
FES
G
902 4FE2/S2 (INORGANIC) CLUSTER
lig 51
IZL
G
903 114 (10~{R})-10-METHYLDODECANOATE
lig 52
9YF
G
904 58 9-METHYLOCTADECANOATE
lig 53
7PH
G
905 38 TETRADECANOATE
lig 54
7PH
H
901 38 TETRADECANOATE
lig 55
HEM
H
902 43PROTOPORPHYRIN IX CONTAINING FE
lig 56
CDL
H
903 74CARDIOLIPIN
lig 57
CDL
H
904 77CARDIOLIPIN
lig 58
CDL
H
905 79CARDIOLIPIN
lig 59
MQ9
H
906 43MENAQUINONE-9
lig 60
MQ9
H
907 58MENAQUINONE-9
lig 61
HEM
H
908 43PROTOPORPHYRIN IX CONTAINING FE
lig 62
MQ9
H
909 58MENAQUINONE-9
lig 63
CDL
I
301 77CARDIOLIPIN
lig 64
CDL
I
302 77CARDIOLIPIN
lig 65
WUO
I
303 97ACYL-PHOSPHATIDYL-MYO-INOSITOL DIMANNOSIDE
lig 66
CDL
J
501 79CARDIOLIPIN
lig 67
TRD
J
502 13TRIDECANE
lig 68
3PE
J
503 321,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 69
MQ9
K
1301 58MENAQUINONE-9
lig 70
TRD
K
1302 13TRIDECANE
lig 71
CDL
L
601 79CARDIOLIPIN
lig 72
HEA
L
602 60HEME-A
lig 73
HEA
L
603 60HEME-A
lig 74
CU
L
604 1COPPER (II) ION
lig 75
MG
L
605 1MAGNESIUM ION
lig 76
CA
L
606 1CALCIUM ION
lig 77
TRD
L
607 13TRIDECANE
lig 78
TRD
L
608 13TRIDECANE
lig 79
CU
X
401 1COPPER (II) ION
lig 80
CU
X
402 1COPPER (II) ION
lig 81
TRD
X
403 13TRIDECANE
lig 82
9YF
b
201 58 9-METHYLOCTADECANOATE
lig 83
PLM
b
202 11PALMITIC ACID
lig 84
9XX
b
203 32 METHYLOCTADECANOATE
lig 85
PLM
c
301 11PALMITIC ACID
lig 86
9XX
c
302 32 METHYLOCTADECANOATE