Analysis of Ligand-Protein Contacts in PDB entry:
8PET


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 48 ligands in PDB entry 8PET. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
a
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
a
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
a
3 11BETA-D-MANNOPYRANOSE
lig 4
MAN
a
4 11ALPHA-D-MANNOPYRANOSE
lig 5
MAN
a
5 11ALPHA-D-MANNOPYRANOSE
lig 6
NAG
b
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
b
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
BMA
b
3 11BETA-D-MANNOPYRANOSE
lig 9
MAN
b
4 11ALPHA-D-MANNOPYRANOSE
lig 10
MAN
b
5 11ALPHA-D-MANNOPYRANOSE
lig 11
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
c
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
NAG
c
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
BMA
c
3 11BETA-D-MANNOPYRANOSE
lig 16
MAN
c
4 11ALPHA-D-MANNOPYRANOSE
lig 17
MAN
c
5 11ALPHA-D-MANNOPYRANOSE
lig 18
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
NAG
d
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
NAG
d
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
BMA
d
3 11BETA-D-MANNOPYRANOSE
lig 23
MAN
d
4 11ALPHA-D-MANNOPYRANOSE
lig 24
MAN
d
5 11ALPHA-D-MANNOPYRANOSE
lig 25
NAG
e
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 26
NAG
e
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 27
BMA
e
3 11BETA-D-MANNOPYRANOSE
lig 28
MAN
e
4 11ALPHA-D-MANNOPYRANOSE
lig 29
MAN
e
5 11ALPHA-D-MANNOPYRANOSE
lig 30
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 31
NAG
I
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 32
R16
A
501 16HEXADECANE
lig 33
PIO
A
502 47 PHOSPHORYL]OXY-PROPYL] OCTANOATE
lig 34
D10
B
501 10DECANE
lig 35
D10
B
502 10DECANE
lig 36
D10
B
503 10DECANE
lig 37
D10
B
504 10DECANE
lig 38
ZN
B
505 1ZINC ION
lig 39
D10
D
501 10DECANE
lig 40
D10
D
502 10DECANE
lig 41
D10
D
503 10DECANE
lig 42
D10
D
504 10DECANE
lig 43
D10
D
505 10DECANE
lig 44
R16
C
501 16HEXADECANE
lig 45
PIO
C
502 47 PHOSPHORYL]OXY-PROPYL] OCTANOATE
lig 46
D10
E
501 10DECANE
lig 47
D10
E
502 10DECANE
lig 48
D10
E
503 10DECANE