Analysis of Ligand-Protein Contacts in PDB entry:
8Q0F


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 83 ligands in PDB entry 8Q0F. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
A
1 10N-FORMYLMETHIONINE
lig 2
2MR
D
85 13N3, N4-DIMETHYLARGININE
lig 3
FME
H
1 10N-FORMYLMETHIONINE
lig 4
FME
J
1 10N-FORMYLMETHIONINE
lig 5
FME
K
1 10N-FORMYLMETHIONINE
lig 6
FME
L
1 10N-FORMYLMETHIONINE
lig 7
FME
M
1 10N-FORMYLMETHIONINE
lig 8
FME
N
1 10N-FORMYLMETHIONINE
lig 9
AYA
Y
1 8N-ACETYLALANINE
lig 10
AYA
b
1 8N-ACETYLALANINE
lig 11
AME
d
1 11N-ACETYLMETHIONINE
lig 12
SAC
i
1 9N-ACETYL-SERINE
lig 13
SAC
m
1 9N-ACETYL-SERINE
lig 14
AME
q
1 11N-ACETYLMETHIONINE
lig 15
AYA
r
1 8N-ACETYLALANINE
lig 16
3PE
A
201 471,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 17
PC1
A
202 351,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 18
PC1
A
203 461,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 19
PLC
A
204 42DIUNDECYL PHOSPHATIDYL CHOLINE
lig 20
SF4
B
201 8IRON/SULFUR CLUSTER
lig 21
PLC
B
202 42DIUNDECYL PHOSPHATIDYL CHOLINE
lig 22
3PE
D
501 491,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 23
FES
E
301 4FE2/S2 (INORGANIC) CLUSTER
lig 24
FMN
F
501 31FLAVIN MONONUCLEOTIDE
lig 25
SF4
F
502 8IRON/SULFUR CLUSTER
lig 26
SF4
G
801 8IRON/SULFUR CLUSTER
lig 27
SF4
G
802 8IRON/SULFUR CLUSTER
lig 28
FES
G
803 4FE2/S2 (INORGANIC) CLUSTER
lig 29
K
G
804 1POTASSIUM ION
lig 30
PC1
H
401 481,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 31
PC1
H
402 421,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 32
SF4
I
201 8IRON/SULFUR CLUSTER
lig 33
SF4
I
202 8IRON/SULFUR CLUSTER
lig 34
3PE
I
203 361,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 35
PC1
I
204 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 36
PC1
I
205 441,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 37
3PE
K
101 441,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 38
CDL
L
701 100CARDIOLIPIN
lig 39
3PE
L
702 451,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 40
3PE
L
703 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 41
3PE
L
704 351,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 42
PC1
L
705 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 43
PLC
L
706 31DIUNDECYL PHOSPHATIDYL CHOLINE
lig 44
ZN
M
601 1ZINC ION
lig 45
CDL
M
602 100CARDIOLIPIN
lig 46
3PE
M
603 501,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 47
3PE
M
604 451,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 48
PC1
M
605 441,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 49
PC1
M
606 351,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 50
PLC
M
607 34DIUNDECYL PHOSPHATIDYL CHOLINE
lig 51
CDL
N
401 85CARDIOLIPIN
lig 52
3PE
N
402 441,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 53
DGT
O
401 312'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
lig 54
MG
O
402 1MAGNESIUM ION
lig 55
NDP
P
501 48 PHOSPHATE
lig 56
ZN
R
201 1ZINC ION
lig 57
EHZ
T
101 37 (3~{S})-3-OXIDANYLTETRADECANETHIOATE
lig 58
EHZ
U
101 37 (3~{S})-3-OXIDANYLTETRADECANETHIOATE
lig 59
CDL
X
201 100CARDIOLIPIN
lig 60
3PE
Y
201 271,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 61
3PE
Y
202 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 62
3PE
Y
203 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 63
3PE
Y
204 471,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 64
3PE
Y
205 371,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 65
PLC
Y
206 32DIUNDECYL PHOSPHATIDYL CHOLINE
lig 66
3PE
Z
201 411,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 67
PLC
Z
202 36DIUNDECYL PHOSPHATIDYL CHOLINE
lig 68
3PE
b
101 351,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 69
CDL
d
201 65CARDIOLIPIN
lig 70
3PE
d
202 491,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 71
PC1
d
203 391,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 72
3PE
g
201 301,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 73
PLC
g
202 29DIUNDECYL PHOSPHATIDYL CHOLINE
lig 74
PC1
h
201 361,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 75
CHD
i
201 29CHOLIC ACID
lig 76
CDL
i
202 80CARDIOLIPIN
lig 77
3PE
m
201 411,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 78
3PE
m
202 411,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 79
PC1
m
203 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 80
MYR
o
201 15MYRISTIC ACID
lig 81
CDL
q
201 61CARDIOLIPIN
lig 82
PC1
q
202 481,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 83
PC1
q
203 341,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE