Analysis of Ligand-Protein Contacts in PDB entry:
8Q1Y


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 96 ligands in PDB entry 8Q1Y. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
A
1 10N-FORMYLMETHIONINE
lig 2
2MR
D
85 13N3, N4-DIMETHYLARGININE
lig 3
FME
H
1 10N-FORMYLMETHIONINE
lig 4
FME
J
1 10N-FORMYLMETHIONINE
lig 5
FME
K
1 10N-FORMYLMETHIONINE
lig 6
FME
L
1 10N-FORMYLMETHIONINE
lig 7
FME
M
1 10N-FORMYLMETHIONINE
lig 8
FME
N
1 10N-FORMYLMETHIONINE
lig 9
AYA
Y
1 8N-ACETYLALANINE
lig 10
AYA
b
1 8N-ACETYLALANINE
lig 11
AME
d
1 11N-ACETYLMETHIONINE
lig 12
SAC
i
1 9N-ACETYL-SERINE
lig 13
SAC
m
1 9N-ACETYL-SERINE
lig 14
AME
q
1 11N-ACETYLMETHIONINE
lig 15
AYA
r
1 8N-ACETYLALANINE
lig 16
3PE
A
201 431,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 17
PC1
A
202 351,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 18
PC1
A
203 411,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 19
SF4
B
201 8IRON/SULFUR CLUSTER
lig 20
PC1
B
202 481,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 21
PLC
B
203 28DIUNDECYL PHOSPHATIDYL CHOLINE
lig 22
FES
E
301 4FE2/S2 (INORGANIC) CLUSTER
lig 23
SF4
F
501 8IRON/SULFUR CLUSTER
lig 24
FMN
F
502 31FLAVIN MONONUCLEOTIDE
lig 25
SF4
G
801 8IRON/SULFUR CLUSTER
lig 26
SF4
G
802 8IRON/SULFUR CLUSTER
lig 27
FES
G
803 4FE2/S2 (INORGANIC) CLUSTER
lig 28
K
G
804 1POTASSIUM ION
lig 29
3PE
H
401 361,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 30
PC1
H
402 481,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 31
PC1
H
403 391,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 32
SF4
I
201 8IRON/SULFUR CLUSTER
lig 33
SF4
I
202 8IRON/SULFUR CLUSTER
lig 34
3PE
I
203 371,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 35
PC1
I
204 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 36
3PE
J
201 311,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 37
3PE
J
202 361,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 38
PLC
J
203 35DIUNDECYL PHOSPHATIDYL CHOLINE
lig 39
3PE
K
101 441,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 40
PC1
L
701 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 41
3PE
L
702 451,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 42
PLC
L
703 42DIUNDECYL PHOSPHATIDYL CHOLINE
lig 43
ZN
M
601 1ZINC ION
lig 44
3PE
M
602 301,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 45
3PE
M
603 501,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 46
3PE
M
604 341,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 47
3PE
M
605 451,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 48
PC1
M
606 351,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 49
CDL
M
607 100CARDIOLIPIN
lig 50
3PE
N
401 451,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 51
3PE
N
402 401,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 52
3PE
N
403 491,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 53
CDL
N
404 84CARDIOLIPIN
lig 54
DGT
O
401 312'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
lig 55
MG
O
402 1MAGNESIUM ION
lig 56
PLC
O
403 42DIUNDECYL PHOSPHATIDYL CHOLINE
lig 57
NDP
P
501 48 PHOSPHATE
lig 58
ZN
R
201 1ZINC ION
lig 59
EHZ
T
101 37 (3~{S})-3-OXIDANYLTETRADECANETHIOATE
lig 60
EHZ
U
101 37 (3~{S})-3-OXIDANYLTETRADECANETHIOATE
lig 61
CDL
X
201 86CARDIOLIPIN
lig 62
3PE
Y
201 271,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 63
3PE
Y
202 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 64
3PE
Y
203 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 65
3PE
Y
204 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 66
3PE
Y
205 461,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 67
3PE
Y
206 341,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 68
3PE
Y
207 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 69
PLC
Y
208 37DIUNDECYL PHOSPHATIDYL CHOLINE
lig 70
3PE
Z
201 371,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 71
3PE
Z
202 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 72
PC1
Z
203 441,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 73
PLC
Z
204 34DIUNDECYL PHOSPHATIDYL CHOLINE
lig 74
3PE
b
101 471,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 75
3PE
b
102 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 76
PLC
b
103 38DIUNDECYL PHOSPHATIDYL CHOLINE
lig 77
3PE
d
201 491,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 78
PC1
d
202 391,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 79
PLC
d
203 32DIUNDECYL PHOSPHATIDYL CHOLINE
lig 80
CDL
d
204 65CARDIOLIPIN
lig 81
3PE
f
101 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 82
PC1
g
201 441,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 83
PLC
g
202 28DIUNDECYL PHOSPHATIDYL CHOLINE
lig 84
3PE
h
201 321,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 85
PC1
h
202 401,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 86
CDL
h
203 70CARDIOLIPIN
lig 87
CHD
i
201 29CHOLIC ACID
lig 88
CDL
i
202 72CARDIOLIPIN
lig 89
3PE
m
201 411,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 90
3PE
m
202 301,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 91
PC1
m
203 401,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 92
MYR
o
201 15MYRISTIC ACID
lig 93
3PE
q
201 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 94
PC1
q
202 231,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 95
3PE
r
201 281,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 96
CDL
r
202 58CARDIOLIPIN