Analysis of Ligand-Protein Contacts in PDB entry:
8Q46


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 86 ligands in PDB entry 8Q46. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
A
1 10N-FORMYLMETHIONINE
lig 2
2MR
D
85 13N3, N4-DIMETHYLARGININE
lig 3
FME
H
1 10N-FORMYLMETHIONINE
lig 4
FME
J
1 10N-FORMYLMETHIONINE
lig 5
FME
K
1 10N-FORMYLMETHIONINE
lig 6
FME
L
1 10N-FORMYLMETHIONINE
lig 7
FME
M
1 10N-FORMYLMETHIONINE
lig 8
FME
N
1 10N-FORMYLMETHIONINE
lig 9
AYA
Y
1 8N-ACETYLALANINE
lig 10
AYA
b
1 8N-ACETYLALANINE
lig 11
AME
d
1 11N-ACETYLMETHIONINE
lig 12
SAC
i
1 9N-ACETYL-SERINE
lig 13
SAC
m
1 9N-ACETYL-SERINE
lig 14
AME
q
1 11N-ACETYLMETHIONINE
lig 15
AYA
r
1 8N-ACETYLALANINE
lig 16
3PE
A
201 471,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 17
PC1
A
202 351,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 18
3PE
A
203 391,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 19
3PE
A
204 441,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 20
PLC
A
205 42DIUNDECYL PHOSPHATIDYL CHOLINE
lig 21
PC1
A
206 461,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 22
SF4
B
201 8IRON/SULFUR CLUSTER
lig 23
PLC
B
202 42DIUNDECYL PHOSPHATIDYL CHOLINE
lig 24
FES
E
301 4FE2/S2 (INORGANIC) CLUSTER
lig 25
FMN
F
501 31FLAVIN MONONUCLEOTIDE
lig 26
SF4
F
502 8IRON/SULFUR CLUSTER
lig 27
SF4
G
801 8IRON/SULFUR CLUSTER
lig 28
SF4
G
802 8IRON/SULFUR CLUSTER
lig 29
FES
G
803 4FE2/S2 (INORGANIC) CLUSTER
lig 30
K
G
804 1POTASSIUM ION
lig 31
PC1
H
401 481,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 32
PC1
H
402 421,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 33
SF4
I
201 8IRON/SULFUR CLUSTER
lig 34
SF4
I
202 8IRON/SULFUR CLUSTER
lig 35
PC1
I
203 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 36
3PE
I
204 361,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 37
3PE
J
201 361,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 38
3PE
K
101 441,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 39
CDL
L
701 100CARDIOLIPIN
lig 40
3PE
L
702 451,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 41
PLC
L
703 31DIUNDECYL PHOSPHATIDYL CHOLINE
lig 42
3PE
L
704 351,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 43
PC1
L
705 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 44
ZN
M
601 1ZINC ION
lig 45
CDL
M
602 100CARDIOLIPIN
lig 46
PC1
M
603 441,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 47
3PE
M
604 501,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 48
3PE
M
605 451,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 49
PC1
M
606 351,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 50
PLC
M
607 34DIUNDECYL PHOSPHATIDYL CHOLINE
lig 51
CDL
N
401 85CARDIOLIPIN
lig 52
3PE
N
402 491,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 53
DGT
O
401 312'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
lig 54
MG
O
402 1MAGNESIUM ION
lig 55
NDP
P
501 48 PHOSPHATE
lig 56
ZN
R
201 1ZINC ION
lig 57
EHZ
T
101 37 (3~{S})-3-OXIDANYLTETRADECANETHIOATE
lig 58
EHZ
U
101 37 (3~{S})-3-OXIDANYLTETRADECANETHIOATE
lig 59
CDL
X
201 100CARDIOLIPIN
lig 60
3PE
Y
201 271,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 61
3PE
Y
202 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 62
3PE
Y
203 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 63
3PE
Y
204 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 64
3PE
Y
205 471,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 65
3PE
Y
206 371,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 66
PLC
Y
207 32DIUNDECYL PHOSPHATIDYL CHOLINE
lig 67
PC1
Z
201 441,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 68
PLC
Z
202 36DIUNDECYL PHOSPHATIDYL CHOLINE
lig 69
3PE
Z
203 411,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 70
3PE
Z
204 351,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 71
CDL
d
201 65CARDIOLIPIN
lig 72
3PE
d
202 491,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 73
PC1
d
203 391,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 74
3PE
f
101 321,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 75
3PE
g
201 301,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 76
PLC
g
202 29DIUNDECYL PHOSPHATIDYL CHOLINE
lig 77
PC1
h
201 361,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 78
CHD
i
201 29CHOLIC ACID
lig 79
CDL
i
202 80CARDIOLIPIN
lig 80
3PE
m
201 411,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 81
3PE
m
202 411,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 82
PC1
m
203 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 83
MYR
o
201 15MYRISTIC ACID
lig 84
CDL
q
201 61CARDIOLIPIN
lig 85
PC1
q
202 481,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 86
PC1
q
203 341,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE