Analysis of Ligand-Protein Contacts in PDB entry:
8Q48


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 106 ligands in PDB entry 8Q48. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
A
1 10N-FORMYLMETHIONINE
lig 2
2MR
D
85 13N3, N4-DIMETHYLARGININE
lig 3
FME
H
1 10N-FORMYLMETHIONINE
lig 4
FME
J
1 10N-FORMYLMETHIONINE
lig 5
FME
K
1 10N-FORMYLMETHIONINE
lig 6
FME
L
1 10N-FORMYLMETHIONINE
lig 7
FME
M
1 10N-FORMYLMETHIONINE
lig 8
FME
N
1 10N-FORMYLMETHIONINE
lig 9
AYA
Y
1 8N-ACETYLALANINE
lig 10
AYA
b
1 8N-ACETYLALANINE
lig 11
AME
d
1 11N-ACETYLMETHIONINE
lig 12
SAC
i
1 9N-ACETYL-SERINE
lig 13
SAC
m
1 9N-ACETYL-SERINE
lig 14
AME
q
1 11N-ACETYLMETHIONINE
lig 15
AYA
r
1 8N-ACETYLALANINE
lig 16
PC1
A
201 351,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 17
PC1
A
202 351,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 18
PC1
A
203 331,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 19
3PE
A
204 371,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 20
3PE
A
205 451,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 21
PLC
A
206 33DIUNDECYL PHOSPHATIDYL CHOLINE
lig 22
SF4
B
201 8IRON/SULFUR CLUSTER
lig 23
PC1
B
202 461,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 24
PLC
B
203 42DIUNDECYL PHOSPHATIDYL CHOLINE
lig 25
PC1
B
204 481,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 26
U10
D
501 63UBIQUINONE-10
lig 27
FES
E
301 4FE2/S2 (INORGANIC) CLUSTER
lig 28
FMN
F
501 31FLAVIN MONONUCLEOTIDE
lig 29
SF4
F
502 8IRON/SULFUR CLUSTER
lig 30
SF4
G
801 8IRON/SULFUR CLUSTER
lig 31
SF4
G
802 8IRON/SULFUR CLUSTER
lig 32
FES
G
803 4FE2/S2 (INORGANIC) CLUSTER
lig 33
K
G
804 1POTASSIUM ION
lig 34
CDL
H
401 81CARDIOLIPIN
lig 35
PC1
H
402 481,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 36
PC1
H
403 391,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 37
PC1
H
404 391,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 38
SF4
I
201 8IRON/SULFUR CLUSTER
lig 39
SF4
I
202 8IRON/SULFUR CLUSTER
lig 40
PC1
I
203 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 41
3PE
I
204 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 42
3PE
J
201 291,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 43
3PE
J
202 361,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 44
PLC
J
203 37DIUNDECYL PHOSPHATIDYL CHOLINE
lig 45
3PE
J
204 441,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 46
CDL
L
701 76CARDIOLIPIN
lig 47
3PE
L
702 451,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 48
PLC
L
703 42DIUNDECYL PHOSPHATIDYL CHOLINE
lig 49
PC1
L
704 471,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 50
ZN
M
601 1ZINC ION
lig 51
3PE
M
602 311,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 52
3PE
M
603 501,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 53
3PE
M
604 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 54
3PE
M
605 451,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 55
PC1
M
606 351,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 56
CDL
M
607 100CARDIOLIPIN
lig 57
PLC
M
608 28DIUNDECYL PHOSPHATIDYL CHOLINE
lig 58
3PE
N
401 491,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 59
CDL
N
402 100CARDIOLIPIN
lig 60
3PE
N
403 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 61
DGT
O
401 312'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
lig 62
MG
O
402 1MAGNESIUM ION
lig 63
PLC
O
403 35DIUNDECYL PHOSPHATIDYL CHOLINE
lig 64
NDP
P
501 48 PHOSPHATE
lig 65
3PE
P
502 351,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 66
CDL
P
503 59CARDIOLIPIN
lig 67
PLC
P
504 32DIUNDECYL PHOSPHATIDYL CHOLINE
lig 68
3PE
P
505 451,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 69
ZN
R
201 1ZINC ION
lig 70
EHZ
T
101 37 (3~{S})-3-OXIDANYLTETRADECANETHIOATE
lig 71
EHZ
U
101 37 (3~{S})-3-OXIDANYLTETRADECANETHIOATE
lig 72
3PE
Y
201 411,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 73
3PE
Y
202 271,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 74
3PE
Y
203 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 75
3PE
Y
204 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 76
3PE
Y
205 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 77
3PE
Y
206 451,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 78
3PE
Y
207 361,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 79
PLC
Y
208 42DIUNDECYL PHOSPHATIDYL CHOLINE
lig 80
3PE
Y
209 431,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 81
PC1
Z
201 441,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 82
3PE
Z
202 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 83
PLC
Z
203 34DIUNDECYL PHOSPHATIDYL CHOLINE
lig 84
3PE
Z
204 411,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 85
3PE
a
101 391,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 86
3PE
b
101 471,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 87
3PE
b
102 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 88
3PE
d
201 491,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 89
PC1
d
202 391,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 90
CDL
d
203 65CARDIOLIPIN
lig 91
CDL
d
204 86CARDIOLIPIN
lig 92
3PE
f
101 441,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 93
3PE
g
201 341,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 94
PLC
g
202 42DIUNDECYL PHOSPHATIDYL CHOLINE
lig 95
PC1
g
203 441,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 96
CDL
h
201 80CARDIOLIPIN
lig 97
PC1
h
202 471,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 98
CHD
i
201 29CHOLIC ACID
lig 99
3PE
m
201 411,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 100
PC1
m
202 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 101
3PE
m
203 321,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 102
MYR
o
201 15MYRISTIC ACID
lig 103
PC1
q
201 491,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 104
3PE
q
202 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 105
CDL
r
201 61CARDIOLIPIN
lig 106
3PE
r
202 341,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI