Analysis of Ligand-Protein Contacts in PDB entry:
8Q4A


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 98 ligands in PDB entry 8Q4A. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
A
1 10N-FORMYLMETHIONINE
lig 2
2MR
D
85 13N3, N4-DIMETHYLARGININE
lig 3
FME
H
1 10N-FORMYLMETHIONINE
lig 4
FME
J
1 10N-FORMYLMETHIONINE
lig 5
FME
K
1 10N-FORMYLMETHIONINE
lig 6
FME
L
1 10N-FORMYLMETHIONINE
lig 7
FME
M
1 10N-FORMYLMETHIONINE
lig 8
FME
N
1 10N-FORMYLMETHIONINE
lig 9
AYA
Y
1 8N-ACETYLALANINE
lig 10
AYA
b
1 8N-ACETYLALANINE
lig 11
AME
d
1 11N-ACETYLMETHIONINE
lig 12
SAC
i
1 9N-ACETYL-SERINE
lig 13
SAC
m
1 9N-ACETYL-SERINE
lig 14
AME
q
1 11N-ACETYLMETHIONINE
lig 15
AYA
r
1 8N-ACETYLALANINE
lig 16
3PE
A
201 471,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 17
PC1
A
202 351,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 18
PC1
A
203 351,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 19
PC1
A
204 331,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 20
3PE
A
205 401,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 21
PLC
A
206 38DIUNDECYL PHOSPHATIDYL CHOLINE
lig 22
SF4
B
201 8IRON/SULFUR CLUSTER
lig 23
PC1
B
202 461,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 24
PC1
B
203 481,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 25
FES
E
301 4FE2/S2 (INORGANIC) CLUSTER
lig 26
SF4
F
501 8IRON/SULFUR CLUSTER
lig 27
FMN
F
502 31FLAVIN MONONUCLEOTIDE
lig 28
SF4
G
801 8IRON/SULFUR CLUSTER
lig 29
SF4
G
802 8IRON/SULFUR CLUSTER
lig 30
FES
G
803 4FE2/S2 (INORGANIC) CLUSTER
lig 31
K
G
804 1POTASSIUM ION
lig 32
U10
H
401 34UBIQUINONE-10
lig 33
CDL
H
402 58CARDIOLIPIN
lig 34
PC1
H
403 411,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 35
PC1
H
404 471,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 36
SF4
I
201 8IRON/SULFUR CLUSTER
lig 37
SF4
I
202 8IRON/SULFUR CLUSTER
lig 38
PC1
I
203 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 39
PC1
I
204 441,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 40
3PE
J
201 371,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 41
PLC
J
202 35DIUNDECYL PHOSPHATIDYL CHOLINE
lig 42
PC1
J
203 481,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 43
3PE
K
101 441,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 44
CDL
L
701 100CARDIOLIPIN
lig 45
PC1
L
702 441,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 46
PLC
L
703 36DIUNDECYL PHOSPHATIDYL CHOLINE
lig 47
3PE
L
704 341,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 48
3PE
L
705 411,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 49
ZN
M
601 1ZINC ION
lig 50
CDL
M
602 100CARDIOLIPIN
lig 51
3PE
M
603 291,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 52
3PE
M
604 501,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 53
PC1
M
605 351,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 54
PLC
M
606 34DIUNDECYL PHOSPHATIDYL CHOLINE
lig 55
CDL
N
401 94CARDIOLIPIN
lig 56
3PE
N
402 491,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 57
DGT
O
401 312'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
lig 58
MG
O
402 1MAGNESIUM ION
lig 59
PLC
O
403 31DIUNDECYL PHOSPHATIDYL CHOLINE
lig 60
PLC
O
404 31DIUNDECYL PHOSPHATIDYL CHOLINE
lig 61
NDP
P
501 48 PHOSPHATE
lig 62
3PE
P
502 381,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 63
ZN
R
201 1ZINC ION
lig 64
EHZ
T
101 37 (3~{S})-3-OXIDANYLTETRADECANETHIOATE
lig 65
EHZ
U
101 37 (3~{S})-3-OXIDANYLTETRADECANETHIOATE
lig 66
3PE
Y
201 411,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 67
3PE
Y
202 451,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 68
3PE
Y
203 271,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 69
3PE
Y
204 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 70
3PE
Y
205 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 71
3PE
Y
206 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 72
3PE
Y
207 451,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 73
3PE
Y
208 361,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 74
PLC
Y
209 42DIUNDECYL PHOSPHATIDYL CHOLINE
lig 75
PLC
Z
201 36DIUNDECYL PHOSPHATIDYL CHOLINE
lig 76
3PE
Z
202 361,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 77
3PE
Z
203 421,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 78
3PE
a
101 361,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 79
3PE
b
101 421,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 80
3PE
b
102 371,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 81
CDL
d
201 65CARDIOLIPIN
lig 82
CDL
d
202 87CARDIOLIPIN
lig 83
3PE
d
203 491,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 84
PC1
d
204 391,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 85
3PE
f
101 241,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 86
PLC
g
201 42DIUNDECYL PHOSPHATIDYL CHOLINE
lig 87
CDL
h
201 76CARDIOLIPIN
lig 88
PC1
h
202 381,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 89
CHD
i
201 29CHOLIC ACID
lig 90
3PE
i
202 451,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 91
PC1
l
701 471,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 92
3PE
m
201 411,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 93
PC1
m
202 411,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 94
MYR
o
201 15MYRISTIC ACID
lig 95
PC1
q
201 491,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 96
3PE
q
202 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 97
CDL
r
201 61CARDIOLIPIN
lig 98
3PE
r
202 301,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI