Analysis of Ligand-Protein Contacts in PDB entry:
8QBY


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 51 ligands in PDB entry 8QBY. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
2MR
D
65 13N3, N4-DIMETHYLARGININE
lig 2
FME
A
1 10N-FORMYLMETHIONINE
lig 3
SF4
G
801 8IRON/SULFUR CLUSTER
lig 4
SF4
G
802 8IRON/SULFUR CLUSTER
lig 5
FES
G
803 4FE2/S2 (INORGANIC) CLUSTER
lig 6
NA
G
804 1SODIUM ION
lig 7
SF4
I
201 8IRON/SULFUR CLUSTER
lig 8
SF4
I
202 8IRON/SULFUR CLUSTER
lig 9
3PH
I
203 391,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 10
P5S
I
204 49 PROPYL]OXY}(HYDROXY)PHOSPHORYL]-L-SERINE
lig 11
CA
I
205 1CALCIUM ION
lig 12
FES
E
301 4FE2/S2 (INORGANIC) CLUSTER
lig 13
3PE
N
501 421,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 14
3PH
N
502 461,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 15
3PE
N
503 481,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 16
3PE
N
504 381,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 17
3PH
N
505 431,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 18
CA
N
506 1CALCIUM ION
lig 19
3PE
H
401 431,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 20
CDL
H
402 65CARDIOLIPIN
lig 21
3PH
H
403 361,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 22
3PH
H
404 261,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 23
3PE
H
405 451,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 24
3PH
H
406 301,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 25
FMN
F
501 31FLAVIN MONONUCLEOTIDE
lig 26
SF4
F
502 8IRON/SULFUR CLUSTER
lig 27
PC1
D
501 421,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 28
CA
D
502 1CALCIUM ION
lig 29
3PE
q
201 361,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 30
3PH
A
201 341,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 31
PC1
J
301 451,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 32
3PH
J
302 321,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 33
3PH
J
303 421,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 34
ZN
R
301 1ZINC ION
lig 35
U10
B
401 29UBIQUINONE-10
lig 36
SF4
B
402 8IRON/SULFUR CLUSTER
lig 37
3PH
L
801 471,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 38
3PH
L
802 451,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 39
P5S
L
803 40 PROPYL]OXY}(HYDROXY)PHOSPHORYL]-L-SERINE
lig 40
3PE
L
804 451,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 41
3PH
L
805 361,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 42
3PH
L
806 291,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 43
3PH
M
601 311,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 44
3PE
M
602 421,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 45
3PH
M
603 331,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 46
3PE
M
604 411,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 47
3PE
M
605 291,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 48
CDL
M
606 65CARDIOLIPIN
lig 49
3PH
M
607 311,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 50
3PH
M
608 331,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 51
CA
M
609 1CALCIUM ION