Analysis of Ligand-Protein Contacts in PDB entry:
8QOD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 20 ligands in PDB entry 8QOD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
CGU
A
6 12GAMMA-CARBOXY-GLUTAMIC ACID
lig 2
CGU
A
7 12GAMMA-CARBOXY-GLUTAMIC ACID
lig 3
CGU
A
14 12GAMMA-CARBOXY-GLUTAMIC ACID
lig 4
CGU
A
16 12GAMMA-CARBOXY-GLUTAMIC ACID
lig 5
CGU
A
19 12GAMMA-CARBOXY-GLUTAMIC ACID
lig 6
CGU
A
20 12GAMMA-CARBOXY-GLUTAMIC ACID
lig 7
CGU
A
25 12GAMMA-CARBOXY-GLUTAMIC ACID
lig 8
CGU
A
26 12GAMMA-CARBOXY-GLUTAMIC ACID
lig 9
CGU
A
29 12GAMMA-CARBOXY-GLUTAMIC ACID
lig 10
CGU
A
35 12GAMMA-CARBOXY-GLUTAMIC ACID
lig 11
CA
A
201 1CALCIUM ION
lig 12
MG
A
202 1MAGNESIUM ION
lig 13
GLC
A
203 11ALPHA-D-GLUCOPYRANOSE
lig 14
FUC
A
204 10ALPHA-L-FUCOPYRANOSE
lig 15
CA
A
205 1CALCIUM ION
lig 16
CA
A
206 1CALCIUM ION
lig 17
WIZ
B
301 35 PROPANOYL]AMINO]ETHYL]PHENOXY]BENZOIC ACI
lig 18
CA
B
302 1CALCIUM ION
lig 19
CL
B
303 1CHLORIDE ION
lig 20
CL
C
301 1CHLORIDE ION