Analysis of Ligand-Protein Contacts in PDB entry:
8RCD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 31 ligands in PDB entry 8RCD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
3DR
I
3 111',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE
lig 2
3DR
I
6 111',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE
lig 3
3DR
I
9 111',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE
lig 4
3DR
I
12 111',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE
lig 5
3DR
I
15 111',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE
lig 6
3DR
I
18 111',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE
lig 7
3DR
I
21 111',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE
lig 8
ATP
A
400 31ADENOSINE-5'-TRIPHOSPHATE
lig 9
CA
A
401 1CALCIUM ION
lig 10
CA
A
402 1CALCIUM ION
lig 11
CA
B
402 1CALCIUM ION
lig 12
ATP
B
400 31ADENOSINE-5'-TRIPHOSPHATE
lig 13
CA
B
401 1CALCIUM ION
lig 14
CA
C
402 1CALCIUM ION
lig 15
ATP
C
400 31ADENOSINE-5'-TRIPHOSPHATE
lig 16
CA
C
401 1CALCIUM ION
lig 17
CA
D
402 1CALCIUM ION
lig 18
ATP
D
400 31ADENOSINE-5'-TRIPHOSPHATE
lig 19
CA
D
401 1CALCIUM ION
lig 20
CA
E
402 1CALCIUM ION
lig 21
ATP
E
400 31ADENOSINE-5'-TRIPHOSPHATE
lig 22
CA
E
401 1CALCIUM ION
lig 23
CA
F
402 1CALCIUM ION
lig 24
ATP
F
400 31ADENOSINE-5'-TRIPHOSPHATE
lig 25
CA
F
401 1CALCIUM ION
lig 26
CA
G
402 1CALCIUM ION
lig 27
ATP
G
400 31ADENOSINE-5'-TRIPHOSPHATE
lig 28
CA
G
401 1CALCIUM ION
lig 29
CA
H
402 1CALCIUM ION
lig 30
ATP
H
400 31ADENOSINE-5'-TRIPHOSPHATE
lig 31
CA
H
401 1CALCIUM ION