Analysis of Ligand-Protein Contacts in PDB entry:
8RGT


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 53 ligands in PDB entry 8RGT. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
2MR
D
85 13N3, N4-DIMETHYLARGININE
lig 2
AYA
r
1 8N-ACETYLALANINE
lig 3
FME
A
1 10N-FORMYLMETHIONINE
lig 4
FME
H
1 10N-FORMYLMETHIONINE
lig 5
FME
J
1 10N-FORMYLMETHIONINE
lig 6
FME
K
1 10N-FORMYLMETHIONINE
lig 7
FME
L
1 10N-FORMYLMETHIONINE
lig 8
FME
M
1 10N-FORMYLMETHIONINE
lig 9
FME
N
1 10N-FORMYLMETHIONINE
lig 10
SAC
i
1 9N-ACETYL-SERINE
lig 11
SF4
6
201 8IRON/SULFUR CLUSTER
lig 12
3PE
6
202 321,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 13
PC1
6
203 431,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 14
FES
2
301 4FE2/S2 (INORGANIC) CLUSTER
lig 15
FMN
1
501 31FLAVIN MONONUCLEOTIDE
lig 16
SF4
1
502 8IRON/SULFUR CLUSTER
lig 17
SF4
3
801 8IRON/SULFUR CLUSTER
lig 18
SF4
3
802 8IRON/SULFUR CLUSTER
lig 19
FES
3
803 4FE2/S2 (INORGANIC) CLUSTER
lig 20
K
3
804 1POTASSIUM ION
lig 21
SF4
9
201 8IRON/SULFUR CLUSTER
lig 22
SF4
9
202 8IRON/SULFUR CLUSTER
lig 23
PC1
9
203 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 24
PC1
9
204 471,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 25
NDP
P
501 48 PHOSPHATE
lig 26
ZN
7
201 1ZINC ION
lig 27
ZMP
T
201 34 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] TETRAD
lig 28
3PE
r
201 461,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 29
CDL
r
202 57CARDIOLIPIN
lig 30
3PE
A
201 431,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 31
3PE
H
401 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 32
3PE
K
201 411,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 33
3PE
L
701 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 34
CDL
L
702 78CARDIOLIPIN
lig 35
3PE
L
703 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 36
3PE
L
704 421,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 37
PC1
M
501 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 38
3PE
M
502 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 39
3PE
M
503 361,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 40
CDL
N
401 90CARDIOLIPIN
lig 41
3PE
N
402 381,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 42
DGT
O
401 312'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
lig 43
MG
O
402 1MAGNESIUM ION
lig 44
ZMP
U
201 32 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] TETRAD
lig 45
3PE
Y
201 281,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 46
CDL
d
201 67CARDIOLIPIN
lig 47
3PE
d
202 311,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 48
3PE
d
203 321,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 49
CDL
h
201 70CARDIOLIPIN
lig 50
3PE
h
202 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 51
3PE
i
201 421,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 52
CDL
m
201 72CARDIOLIPIN
lig 53
3PE
m
202 301,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI