Analysis of Ligand-Protein Contacts in PDB entry:
8RTM


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 89 ligands in PDB entry 8RTM. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
MO
A
901 1MOLYBDENUM ATOM
lig 2
MGD
A
902 47 DINUCLEOTIDE
lig 3
MGD
A
903 47 DINUCLEOTIDE
lig 4
F3S
A
904 7FE3-S4 CLUSTER
lig 5
EDO
A
905 41,2-ETHANEDIOL
lig 6
EDO
A
906 41,2-ETHANEDIOL
lig 7
PEG
A
907 7DI(HYDROXYETHYL)ETHER
lig 8
PEG
A
908 7DI(HYDROXYETHYL)ETHER
lig 9
PEG
A
909 7DI(HYDROXYETHYL)ETHER
lig 10
PEG
A
910 7DI(HYDROXYETHYL)ETHER
lig 11
SBO
A
911 3TRIHYDROXYANTIMONITE(III)
lig 12
P33
A
912 223,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL
lig 13
PEG
A
913 7DI(HYDROXYETHYL)ETHER
lig 14
PEG
A
914 7DI(HYDROXYETHYL)ETHER
lig 15
PEG
A
915 7DI(HYDROXYETHYL)ETHER
lig 16
PGE
A
916 10TRIETHYLENE GLYCOL
lig 17
PEG
A
917 7DI(HYDROXYETHYL)ETHER
lig 18
PGE
A
918 10TRIETHYLENE GLYCOL
lig 19
EDO
A
919 41,2-ETHANEDIOL
lig 20
O
A
920 1OXYGEN ATOM
lig 21
PEG
A
921 7DI(HYDROXYETHYL)ETHER
lig 22
NA
A
922 1SODIUM ION
lig 23
PEG
B
2901 7DI(HYDROXYETHYL)ETHER
lig 24
FES
B
2902 4FE2/S2 (INORGANIC) CLUSTER
lig 25
GOL
B
2903 6GLYCEROL
lig 26
PEG
B
2904 7DI(HYDROXYETHYL)ETHER
lig 27
GOL
B
2905 6GLYCEROL
lig 28
PEG
B
2906 7DI(HYDROXYETHYL)ETHER
lig 29
F3S
C
901 7FE3-S4 CLUSTER
lig 30
MGD
C
902 47 DINUCLEOTIDE
lig 31
4MO
C
903 1MOLYBDENUM(IV) ION
lig 32
MGD
C
904 47 DINUCLEOTIDE
lig 33
EDO
C
905 41,2-ETHANEDIOL
lig 34
EDO
C
906 41,2-ETHANEDIOL
lig 35
EDO
C
907 41,2-ETHANEDIOL
lig 36
EDO
C
908 41,2-ETHANEDIOL
lig 37
PEG
C
909 7DI(HYDROXYETHYL)ETHER
lig 38
EDO
C
910 41,2-ETHANEDIOL
lig 39
P4G
C
911 111-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE
lig 40
1PE
C
912 16PENTAETHYLENE GLYCOL
lig 41
PEG
C
913 7DI(HYDROXYETHYL)ETHER
lig 42
PEG
C
914 7DI(HYDROXYETHYL)ETHER
lig 43
EDO
C
915 41,2-ETHANEDIOL
lig 44
PG0
C
916 82-(2-METHOXYETHOXY)ETHANOL
lig 45
PGE
C
917 10TRIETHYLENE GLYCOL
lig 46
SBO
C
918 4TRIHYDROXYANTIMONITE(III)
lig 47
PEG
C
919 7DI(HYDROXYETHYL)ETHER
lig 48
O
C
920 1OXYGEN ATOM
lig 49
NA
C
921 1SODIUM ION
lig 50
FES
D
201 4FE2/S2 (INORGANIC) CLUSTER
lig 51
MGD
E
901 47 DINUCLEOTIDE
lig 52
MGD
E
902 47 DINUCLEOTIDE
lig 53
4MO
E
903 1MOLYBDENUM(IV) ION
lig 54
F3S
E
904 7FE3-S4 CLUSTER
lig 55
EDO
E
905 41,2-ETHANEDIOL
lig 56
EDO
E
906 41,2-ETHANEDIOL
lig 57
PEG
E
907 7DI(HYDROXYETHYL)ETHER
lig 58
GOL
E
908 6GLYCEROL
lig 59
PEG
E
909 7DI(HYDROXYETHYL)ETHER
lig 60
PEG
E
910 7DI(HYDROXYETHYL)ETHER
lig 61
PEG
E
911 7DI(HYDROXYETHYL)ETHER
lig 62
PEG
E
912 7DI(HYDROXYETHYL)ETHER
lig 63
PEG
E
913 7DI(HYDROXYETHYL)ETHER
lig 64
EDO
E
914 41,2-ETHANEDIOL
lig 65
EDO
E
915 41,2-ETHANEDIOL
lig 66
PGE
E
916 10TRIETHYLENE GLYCOL
lig 67
SBO
E
917 4TRIHYDROXYANTIMONITE(III)
lig 68
O
E
918 1OXYGEN ATOM
lig 69
NA
E
919 1SODIUM ION
lig 70
FES
F
201 4FE2/S2 (INORGANIC) CLUSTER
lig 71
PEG
F
202 7DI(HYDROXYETHYL)ETHER
lig 72
MGD
G
901 47 DINUCLEOTIDE
lig 73
MGD
G
902 47 DINUCLEOTIDE
lig 74
F3S
G
903 7FE3-S4 CLUSTER
lig 75
4MO
G
904 1MOLYBDENUM(IV) ION
lig 76
EDO
G
905 41,2-ETHANEDIOL
lig 77
EDO
G
906 41,2-ETHANEDIOL
lig 78
PEG
G
907 7DI(HYDROXYETHYL)ETHER
lig 79
PEG
G
908 7DI(HYDROXYETHYL)ETHER
lig 80
SBO
G
909 3TRIHYDROXYANTIMONITE(III)
lig 81
1PE
G
910 16PENTAETHYLENE GLYCOL
lig 82
PEG
G
911 7DI(HYDROXYETHYL)ETHER
lig 83
PEG
G
912 7DI(HYDROXYETHYL)ETHER
lig 84
PGE
G
913 10TRIETHYLENE GLYCOL
lig 85
EDO
G
914 41,2-ETHANEDIOL
lig 86
O
G
915 1OXYGEN ATOM
lig 87
NA
G
916 1SODIUM ION
lig 88
PEG
H
2201 7DI(HYDROXYETHYL)ETHER
lig 89
FES
H
2202 4FE2/S2 (INORGANIC) CLUSTER