Analysis of Ligand-Protein Contacts in PDB entry:
8SGD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 19 ligands in PDB entry 8SGD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
GDP
A
401 28GUANOSINE-5'-DIPHOSPHATE
lig 2
NA
A
402 1SODIUM ION
lig 3
NA
A
403 1SODIUM ION
lig 4
NA
A
404 1SODIUM ION
lig 5
GTP
B
501 32GUANOSINE-5'-TRIPHOSPHATE
lig 6
MG
B
502 1MAGNESIUM ION
lig 7
NA
B
503 1SODIUM ION
lig 8
NA
B
504 1SODIUM ION
lig 9
NA
B
505 1SODIUM ION
lig 10
GDP
C
401 28GUANOSINE-5'-DIPHOSPHATE
lig 11
NA
C
402 1SODIUM ION
lig 12
NA
C
403 1SODIUM ION
lig 13
NA
C
404 1SODIUM ION
lig 14
NA
C
405 1SODIUM ION
lig 15
NA
C
406 1SODIUM ION
lig 16
NA
C
407 1SODIUM ION
lig 17
GTP
D
501 32GUANOSINE-5'-TRIPHOSPHATE
lig 18
MG
D
502 1MAGNESIUM ION
lig 19
NA
D
503 1SODIUM ION