Analysis of Ligand-Protein Contacts in PDB entry:
8VGS


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 40 ligands in PDB entry 8VGS. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
KCX
A
194 12LYSINE NZ-CARBOXYLIC ACID
lig 2
KCX
B
194 12LYSINE NZ-CARBOXYLIC ACID
lig 3
KCX
C
194 12LYSINE NZ-CARBOXYLIC ACID
lig 4
KCX
D
194 12LYSINE NZ-CARBOXYLIC ACID
lig 5
KCX
E
194 12LYSINE NZ-CARBOXYLIC ACID
lig 6
KCX
F
194 12LYSINE NZ-CARBOXYLIC ACID
lig 7
KCX
G
194 12LYSINE NZ-CARBOXYLIC ACID
lig 8
KCX
H
194 12LYSINE NZ-CARBOXYLIC ACID
lig 9
KCX
I
194 12LYSINE NZ-CARBOXYLIC ACID
lig 10
KCX
J
194 12LYSINE NZ-CARBOXYLIC ACID
lig 11
MG
A
501 1MAGNESIUM ION
lig 12
MG
A
502 1MAGNESIUM ION
lig 13
MG
A
503 1MAGNESIUM ION
lig 14
CAP
A
504 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 15
MG
B
501 1MAGNESIUM ION
lig 16
MG
B
502 1MAGNESIUM ION
lig 17
MG
B
503 1MAGNESIUM ION
lig 18
CAP
B
504 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 19
MG
C
501 1MAGNESIUM ION
lig 20
MG
C
502 1MAGNESIUM ION
lig 21
CAP
C
503 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 22
MG
D
501 1MAGNESIUM ION
lig 23
MG
D
502 1MAGNESIUM ION
lig 24
CAP
D
503 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 25
MG
E
501 1MAGNESIUM ION
lig 26
CAP
E
502 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 27
MG
F
501 1MAGNESIUM ION
lig 28
MG
F
502 1MAGNESIUM ION
lig 29
CAP
F
503 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 30
MG
G
501 1MAGNESIUM ION
lig 31
CAP
G
502 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 32
MG
H
501 1MAGNESIUM ION
lig 33
CAP
H
502 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 34
MG
I
501 1MAGNESIUM ION
lig 35
MG
I
502 1MAGNESIUM ION
lig 36
MG
I
503 1MAGNESIUM ION
lig 37
CAP
I
504 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 38
MG
J
501 1MAGNESIUM ION
lig 39
MG
J
502 1MAGNESIUM ION
lig 40
CAP
J
503 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE