Analysis of Ligand-Protein Contacts in PDB entry:
8VME


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 11 ligands in PDB entry 8VME. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SEP
C
45 10PHOSPHOSERINE
lig 2
ADP
A
401 27ADENOSINE-5'-DIPHOSPHATE
lig 3
MG
A
402 1MAGNESIUM ION
lig 4
MG
A
403 1MAGNESIUM ION
lig 5
GOL
A
404 6GLYCEROL
lig 6
GOL
A
405 6GLYCEROL
lig 7
GOL
A
406 6GLYCEROL
lig 8
GOL
A
407 6GLYCEROL
lig 9
GOL
A
408 6GLYCEROL
lig 10
GOL
A
409 6GLYCEROL
lig 11
NA
A
410 1SODIUM ION