Analysis of Ligand-Protein Contacts in PDB entry:
8YD1


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 31 ligands in PDB entry 8YD1. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
MG
A
901 1MAGNESIUM ION
lig 2
ATP
A
902 31ADENOSINE-5'-TRIPHOSPHATE
lig 3
MG
A
903 1MAGNESIUM ION
lig 4
ATP
A
904 31ADENOSINE-5'-TRIPHOSPHATE
lig 5
MG
B
901 1MAGNESIUM ION
lig 6
MG
B
902 1MAGNESIUM ION
lig 7
ATP
B
903 31ADENOSINE-5'-TRIPHOSPHATE
lig 8
ATP
B
904 31ADENOSINE-5'-TRIPHOSPHATE
lig 9
ATP
C
901 31ADENOSINE-5'-TRIPHOSPHATE
lig 10
MG
C
902 1MAGNESIUM ION
lig 11
MG
C
903 1MAGNESIUM ION
lig 12
ATP
C
904 31ADENOSINE-5'-TRIPHOSPHATE
lig 13
ADP
D
901 27ADENOSINE-5'-DIPHOSPHATE
lig 14
MG
D
902 1MAGNESIUM ION
lig 15
ATP
D
903 31ADENOSINE-5'-TRIPHOSPHATE
lig 16
ADP
E
901 27ADENOSINE-5'-DIPHOSPHATE
lig 17
ADP
F
901 27ADENOSINE-5'-DIPHOSPHATE
lig 18
BO2
G
301 28 YLCARBONYL)-L-PHENYLALANINAMIDE
lig 19
BO2
H
301 28 YLCARBONYL)-L-PHENYLALANINAMIDE
lig 20
BO2
I
301 28 YLCARBONYL)-L-PHENYLALANINAMIDE
lig 21
BO2
J
301 28 YLCARBONYL)-L-PHENYLALANINAMIDE
lig 22
BO2
K
301 28 YLCARBONYL)-L-PHENYLALANINAMIDE
lig 23
BO2
L
301 28 YLCARBONYL)-L-PHENYLALANINAMIDE
lig 24
BO2
M
301 28 YLCARBONYL)-L-PHENYLALANINAMIDE
lig 25
BO2
N
201 28 YLCARBONYL)-L-PHENYLALANINAMIDE
lig 26
BO2
O
201 28 YLCARBONYL)-L-PHENYLALANINAMIDE
lig 27
BO2
P
201 28 YLCARBONYL)-L-PHENYLALANINAMIDE
lig 28
BO2
Q
201 28 YLCARBONYL)-L-PHENYLALANINAMIDE
lig 29
BO2
R
201 28 YLCARBONYL)-L-PHENYLALANINAMIDE
lig 30
BO2
S
201 28 YLCARBONYL)-L-PHENYLALANINAMIDE
lig 31
BO2
T
201 28 YLCARBONYL)-L-PHENYLALANINAMIDE