Analysis of Ligand-Protein Contacts in PDB entry:
8YDM


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 48 ligands in PDB entry 8YDM. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
BCL
A
101 53BACTERIOCHLOROPHYLL A
lig 2
U4Z
A
102 40GAMMA-CAROTENE
lig 3
BCL
A
103 47BACTERIOCHLOROPHYLL A
lig 4
BCL
A
104 49BACTERIOCHLOROPHYLL A
lig 5
U4Z
B
101 40GAMMA-CAROTENE
lig 6
HEM
C
501 43PROTOPORPHYRIN IX CONTAINING FE
lig 7
HEM
C
502 43PROTOPORPHYRIN IX CONTAINING FE
lig 8
HEM
C
503 43PROTOPORPHYRIN IX CONTAINING FE
lig 9
HEM
C
504 43PROTOPORPHYRIN IX CONTAINING FE
lig 10
PGV
C
505 45 OCTADEC-11-ENOATE
lig 11
BCL
D
101 48BACTERIOCHLOROPHYLL A
lig 12
U4Z
D
102 40GAMMA-CAROTENE
lig 13
BCL
D
103 47BACTERIOCHLOROPHYLL A
lig 14
U4Z
D
104 40GAMMA-CAROTENE
lig 15
BCL
E
101 46BACTERIOCHLOROPHYLL A
lig 16
BCL
F
101 47BACTERIOCHLOROPHYLL A
lig 17
U4Z
G
101 40GAMMA-CAROTENE
lig 18
BCL
G
102 48BACTERIOCHLOROPHYLL A
lig 19
BCL
G
103 46BACTERIOCHLOROPHYLL A
lig 20
BCL
H
101 42BACTERIOCHLOROPHYLL A
lig 21
U4Z
I
101 40GAMMA-CAROTENE
lig 22
U4Z
I
102 40GAMMA-CAROTENE
lig 23
BCL
I
103 46BACTERIOCHLOROPHYLL A
lig 24
BCL
I
104 44BACTERIOCHLOROPHYLL A
lig 25
BCL
J
101 47BACTERIOCHLOROPHYLL A
lig 26
U4Z
K
101 40GAMMA-CAROTENE
lig 27
BCL
K
102 47BACTERIOCHLOROPHYLL A
lig 28
U4Z
K
103 40GAMMA-CAROTENE
lig 29
BCL
K
104 51BACTERIOCHLOROPHYLL A
lig 30
MQE
L
401 63 38,42-UNDECAEN-1-YL]NAPHTHALENE-1,4-DIONE
lig 31
BCL
L
402 66BACTERIOCHLOROPHYLL A
lig 32
BPH
L
403 65BACTERIOPHEOPHYTIN A
lig 33
BPH
M
401 65BACTERIOPHEOPHYTIN A
lig 34
BCL
M
402 66BACTERIOCHLOROPHYLL A
lig 35
MQE
M
403 63 38,42-UNDECAEN-1-YL]NAPHTHALENE-1,4-DIONE
lig 36
MN
M
404 1MANGANESE (II) ION
lig 37
BCL
M
405 66BACTERIOCHLOROPHYLL A
lig 38
BPH
M
406 46BACTERIOPHEOPHYTIN A
lig 39
BCL
O
101 47BACTERIOCHLOROPHYLL A
lig 40
U4Z
O
102 40GAMMA-CAROTENE
lig 41
BCL
O
103 47BACTERIOCHLOROPHYLL A
lig 42
U4Z
P
101 40GAMMA-CAROTENE
lig 43
BCL
P
102 48BACTERIOCHLOROPHYLL A
lig 44
BCL
Q
101 47BACTERIOCHLOROPHYLL A
lig 45
U4Z
Q
102 40GAMMA-CAROTENE
lig 46
U4Z
R
101 40GAMMA-CAROTENE
lig 47
BCL
R
102 47BACTERIOCHLOROPHYLL A
lig 48
BCL
R
103 43BACTERIOCHLOROPHYLL A