Analysis of Ligand-Protein Contacts in PDB entry:
8YGD

Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 87 ligands in PDB entry 8YGD. Click on ligand of interest for LPC analysis.

	HET ID	Chain ID	Residue N	Number of atoms	Ligand name
lig 1	BCL	0	101	61	BACTERIOCHLOROPHYLL A
lig 2	SPO	0	102	42	SPHEROIDENE
lig 3	SPO	0	103	42	SPHEROIDENE
lig 4	BCL	1	101	56	BACTERIOCHLOROPHYLL A
lig 5	BCL	1	102	61	BACTERIOCHLOROPHYLL A
lig 6	SPO	2	101	42	SPHEROIDENE
lig 7	SPO	2	102	42	SPHEROIDENE
lig 8	SPO	2	103	42	SPHEROIDENE
lig 9	BCL	3	101	66	BACTERIOCHLOROPHYLL A
lig 10	BCL	3	102	66	BACTERIOCHLOROPHYLL A
lig 11	SPO	3	103	42	SPHEROIDENE
lig 12	BCL	7	101	61	BACTERIOCHLOROPHYLL A
lig 13	SPO	8	101	39	SPHEROIDENE
lig 14	BCL	8	102	66	BACTERIOCHLOROPHYLL A
lig 15	BCL	9	101	66	BACTERIOCHLOROPHYLL A
lig 16	SPO	9	102	42	SPHEROIDENE
lig 17	PC1	9	103	45	1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 18	BCL	A	101	66	BACTERIOCHLOROPHYLL A
lig 19	SPO	A	102	42	SPHEROIDENE
lig 20	PC1	A	103	32	1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 21	PC1	A	104	32	1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 22	BCL	B	101	66	BACTERIOCHLOROPHYLL A
lig 23	BCL	C	101	66	BACTERIOCHLOROPHYLL A
lig 24	SPO	D	101	42	SPHEROIDENE
lig 25	BCL	D	102	66	BACTERIOCHLOROPHYLL A
lig 26	SPO	D	103	42	SPHEROIDENE
lig 27	BCL	E	101	66	BACTERIOCHLOROPHYLL A
lig 28	SPO	E	102	42	SPHEROIDENE
lig 29	CDL	F	101	78	CARDIOLIPIN
lig 30	BCL	F	102	66	BACTERIOCHLOROPHYLL A
lig 31	PC1	F	103	37	1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 32	BCL	F	104	66	BACTERIOCHLOROPHYLL A
lig 33	SPO	F	105	42	SPHEROIDENE
lig 34	PC1	H	301	47	1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 35	BCL	I	101	66	BACTERIOCHLOROPHYLL A
lig 36	SPO	I	102	42	SPHEROIDENE
lig 37	SPO	J	101	42	SPHEROIDENE
lig 38	BCL	J	102	66	BACTERIOCHLOROPHYLL A
lig 39	BCL	K	101	66	BACTERIOCHLOROPHYLL A
lig 40	SPO	K	102	42	SPHEROIDENE
lig 41	BCL	L	301	66	BACTERIOCHLOROPHYLL A
lig 42	BCL	L	302	63	BACTERIOCHLOROPHYLL A
lig 43	BPH	L	303	62	BACTERIOPHEOPHYTIN A
lig 44	U10	L	304	43	UBIQUINONE-10
lig 45	PC1	L	305	36	1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 46	U10	L	306	43	UBIQUINONE-10
lig 47	U10	L	307	48	UBIQUINONE-10
lig 48	U10	L	308	19	UBIQUINONE-10
lig 49	BCL	L	309	66	BACTERIOCHLOROPHYLL A
lig 50	U10	L	310	38	UBIQUINONE-10
lig 51	BPH	L	311	55	BACTERIOPHEOPHYTIN A
lig 52	PC1	M	401	40	1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 53	PC1	M	402	35	1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 54	BCL	M	403	66	BACTERIOCHLOROPHYLL A
lig 55	FE2	M	404	1	FE (II) ION
lig 56	U10	M	405	48	UBIQUINONE-10
lig 57	SPO	M	406	42	SPHEROIDENE
lig 58	CDL	M	407	100	CARDIOLIPIN
lig 59	CDL	M	408	78	CARDIOLIPIN
lig 60	PC1	M	409	45	1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 61	PC1	M	410	32	1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 62	SPO	N	101	42	SPHEROIDENE
lig 63	BCL	N	102	66	BACTERIOCHLOROPHYLL A
lig 64	BCL	O	101	66	BACTERIOCHLOROPHYLL A
lig 65	SPO	O	102	42	SPHEROIDENE
lig 66	SPO	P	101	42	SPHEROIDENE
lig 67	BCL	P	102	66	BACTERIOCHLOROPHYLL A
lig 68	BCL	Q	101	66	BACTERIOCHLOROPHYLL A
lig 69	SPO	R	101	42	SPHEROIDENE
lig 70	SPO	R	102	42	SPHEROIDENE
lig 71	BCL	R	103	66	BACTERIOCHLOROPHYLL A
lig 72	SPO	S	101	42	SPHEROIDENE
lig 73	BCL	S	102	66	BACTERIOCHLOROPHYLL A
lig 74	SPO	S	103	42	SPHEROIDENE
lig 75	BCL	T	101	66	BACTERIOCHLOROPHYLL A
lig 76	SPO	T	102	42	SPHEROIDENE
lig 77	BCL	U	101	66	BACTERIOCHLOROPHYLL A
lig 78	SPO	U	102	42	SPHEROIDENE
lig 79	SPO	U	103	42	SPHEROIDENE
lig 80	BCL	V	101	66	BACTERIOCHLOROPHYLL A
lig 81	SPO	W	101	42	SPHEROIDENE
lig 82	BCL	W	102	66	BACTERIOCHLOROPHYLL A
lig 83	PC1	W	103	32	1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 84	U10	X	101	48	UBIQUINONE-10
lig 85	SPO	Z	101	42	SPHEROIDENE
lig 86	BCL	a	101	56	BACTERIOCHLOROPHYLL A
lig 87	BCL	b	101	61	BACTERIOCHLOROPHYLL A

Analysis of Ligand-Protein Contacts in PDB entry: 8YGD

Analysis of Ligand-Protein Contacts in PDB entry:
8YGD