Analysis of Ligand-Protein Contacts in PDB entry:
8YI9


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 24 ligands in PDB entry 8YI9. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
RP5
A
401 145-O-PHOSPHONO-BETA-D-RIBOFURANOSE
lig 2
MG
A
402 1MAGNESIUM ION
lig 3
MG
A
403 1MAGNESIUM ION
lig 4
ADP
A
404 27ADENOSINE-5'-DIPHOSPHATE
lig 5
RP5
B
401 145-O-PHOSPHONO-BETA-D-RIBOFURANOSE
lig 6
MG
B
402 1MAGNESIUM ION
lig 7
MG
B
403 1MAGNESIUM ION
lig 8
ADP
B
404 27ADENOSINE-5'-DIPHOSPHATE
lig 9
RP5
C
401 145-O-PHOSPHONO-BETA-D-RIBOFURANOSE
lig 10
MG
C
402 1MAGNESIUM ION
lig 11
MG
C
403 1MAGNESIUM ION
lig 12
ADP
C
404 27ADENOSINE-5'-DIPHOSPHATE
lig 13
ADP
D
401 27ADENOSINE-5'-DIPHOSPHATE
lig 14
RP5
D
402 145-O-PHOSPHONO-BETA-D-RIBOFURANOSE
lig 15
MG
D
403 1MAGNESIUM ION
lig 16
MG
D
404 1MAGNESIUM ION
lig 17
ADP
E
401 27ADENOSINE-5'-DIPHOSPHATE
lig 18
RP5
E
402 145-O-PHOSPHONO-BETA-D-RIBOFURANOSE
lig 19
MG
E
403 1MAGNESIUM ION
lig 20
MG
E
404 1MAGNESIUM ION
lig 21
ADP
F
401 27ADENOSINE-5'-DIPHOSPHATE
lig 22
RP5
F
402 145-O-PHOSPHONO-BETA-D-RIBOFURANOSE
lig 23
MG
F
403 1MAGNESIUM ION
lig 24
MG
F
404 1MAGNESIUM ION