Analysis of Ligand-Protein Contacts in PDB entry:
8YIB


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 41 ligands in PDB entry 8YIB. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
FMT
A
401 3FORMIC ACID
lig 2
OCA
A
402 10OCTANOIC ACID (CAPRYLIC ACID)
lig 3
PPI
A
403 5PROPANOIC ACID
lig 4
ACY
A
404 4ACETIC ACID
lig 5
4I1
A
405 20PETROSELINIC ACID
lig 6
OCA
A
406 10OCTANOIC ACID (CAPRYLIC ACID)
lig 7
BUA
A
407 6BUTANOIC ACID
lig 8
DAO
A
408 14LAURIC ACID
lig 9
ZN
A
409 1ZINC ION
lig 10
CA
A
410 1CALCIUM ION
lig 11
MG
A
411 1MAGNESIUM ION
lig 12
GOL
A
412 6GLYCEROL
lig 13
GOL
A
413 6GLYCEROL
lig 14
6NA
A
414 8HEXANOIC ACID
lig 15
FMT
A
415 3FORMIC ACID
lig 16
FMT
A
416 3FORMIC ACID
lig 17
FMT
A
417 3FORMIC ACID
lig 18
FMT
A
418 3FORMIC ACID
lig 19
DAO
A
419 14LAURIC ACID
lig 20
CL
A
420 1CHLORIDE ION
lig 21
CL
A
421 1CHLORIDE ION
lig 22
6NA
B
401 8HEXANOIC ACID
lig 23
FMT
B
402 3FORMIC ACID
lig 24
6NA
B
403 8HEXANOIC ACID
lig 25
BUA
B
404 6BUTANOIC ACID
lig 26
OCA
B
405 10OCTANOIC ACID (CAPRYLIC ACID)
lig 27
OCA
B
406 10OCTANOIC ACID (CAPRYLIC ACID)
lig 28
4I1
B
407 20PETROSELINIC ACID
lig 29
DAO
B
408 14LAURIC ACID
lig 30
ZN
B
409 1ZINC ION
lig 31
CA
B
410 1CALCIUM ION
lig 32
GOL
B
411 6GLYCEROL
lig 33
GOL
B
412 6GLYCEROL
lig 34
GOL
B
413 6GLYCEROL
lig 35
FMT
B
414 3FORMIC ACID
lig 36
FMT
B
415 3FORMIC ACID
lig 37
FMT
B
416 3FORMIC ACID
lig 38
FMT
B
417 3FORMIC ACID
lig 39
DAO
B
418 14LAURIC ACID
lig 40
CL
B
419 1CHLORIDE ION
lig 41
CL
B
420 1CHLORIDE ION