Analysis of Ligand-Protein Contacts in PDB entry:
8YQN


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 38 ligands in PDB entry 8YQN. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
H
3 11BETA-D-MANNOPYRANOSE
lig 4
MAN
H
4 11ALPHA-D-MANNOPYRANOSE
lig 5
MAN
H
5 11ALPHA-D-MANNOPYRANOSE
lig 6
MAN
H
6 11ALPHA-D-MANNOPYRANOSE
lig 7
MAN
H
7 11ALPHA-D-MANNOPYRANOSE
lig 8
MAN
H
8 11ALPHA-D-MANNOPYRANOSE
lig 9
MAN
H
9 11ALPHA-D-MANNOPYRANOSE
lig 10
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
I
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
BMA
I
3 11BETA-D-MANNOPYRANOSE
lig 13
MAN
I
4 11ALPHA-D-MANNOPYRANOSE
lig 14
MAN
I
5 11ALPHA-D-MANNOPYRANOSE
lig 15
MAN
I
6 11ALPHA-D-MANNOPYRANOSE
lig 16
MAN
I
7 11ALPHA-D-MANNOPYRANOSE
lig 17
MAN
I
8 11ALPHA-D-MANNOPYRANOSE
lig 18
MAN
I
9 11ALPHA-D-MANNOPYRANOSE
lig 19
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
NAG
J
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
BMA
J
3 11BETA-D-MANNOPYRANOSE
lig 22
NAG
K
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 23
NAG
K
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 24
BMA
K
3 11BETA-D-MANNOPYRANOSE
lig 25
NAG
L
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 26
NAG
L
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 27
NAG
L
3 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 28
MAN
L
4 11ALPHA-D-MANNOPYRANOSE
lig 29
MAN
L
5 11ALPHA-D-MANNOPYRANOSE
lig 30
POV
A
501 31 ENOYLOXY]PROPYL 2-(TRIMETHYLAMMONIO)ETHYL
lig 31
NAG
B
601 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 32
NAG
B
602 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 33
OCT
B
603 8N-OCTANE
lig 34
POV
C
501 35 ENOYLOXY]PROPYL 2-(TRIMETHYLAMMONIO)ETHYL
lig 35
POV
C
502 35 ENOYLOXY]PROPYL 2-(TRIMETHYLAMMONIO)ETHYL
lig 36
POV
D
501 31 ENOYLOXY]PROPYL 2-(TRIMETHYLAMMONIO)ETHYL
lig 37
NAG
E
501 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 38
PLM
E
502 15PALMITIC ACID