Analysis of Ligand-Protein Contacts in PDB entry:
8YVM


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 72 ligands in PDB entry 8YVM. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
G
3 11BETA-D-MANNOPYRANOSE
lig 4
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
I
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
J
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
BMA
J
3 11BETA-D-MANNOPYRANOSE
lig 11
MAN
J
4 11ALPHA-D-MANNOPYRANOSE
lig 12
MAN
J
5 11ALPHA-D-MANNOPYRANOSE
lig 13
MAN
J
6 11ALPHA-D-MANNOPYRANOSE
lig 14
MAN
J
7 11ALPHA-D-MANNOPYRANOSE
lig 15
MAN
J
8 11ALPHA-D-MANNOPYRANOSE
lig 16
NAG
K
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
NAG
K
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
BMA
K
3 11BETA-D-MANNOPYRANOSE
lig 19
NAG
L
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
NAG
L
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
NAG
M
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
NAG
M
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 23
NAG
N
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 24
NAG
N
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 25
BMA
N
3 11BETA-D-MANNOPYRANOSE
lig 26
MAN
N
4 11ALPHA-D-MANNOPYRANOSE
lig 27
MAN
N
5 11ALPHA-D-MANNOPYRANOSE
lig 28
MAN
N
6 11ALPHA-D-MANNOPYRANOSE
lig 29
MAN
N
7 11ALPHA-D-MANNOPYRANOSE
lig 30
MAN
N
8 11ALPHA-D-MANNOPYRANOSE
lig 31
NAG
O
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 32
NAG
O
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 33
BMA
O
3 11BETA-D-MANNOPYRANOSE
lig 34
NAG
P
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 35
NAG
P
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 36
NAG
Q
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 37
NAG
Q
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 38
NAG
R
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 39
NAG
R
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 40
BMA
R
3 11BETA-D-MANNOPYRANOSE
lig 41
MAN
R
4 11ALPHA-D-MANNOPYRANOSE
lig 42
MAN
R
5 11ALPHA-D-MANNOPYRANOSE
lig 43
MAN
R
6 11ALPHA-D-MANNOPYRANOSE
lig 44
MAN
R
7 11ALPHA-D-MANNOPYRANOSE
lig 45
MAN
R
8 11ALPHA-D-MANNOPYRANOSE
lig 46
NAG
S
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 47
NAG
S
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 48
BMA
S
3 11BETA-D-MANNOPYRANOSE
lig 49
NAG
T
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 50
NAG
T
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 51
NAG
U
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 52
NAG
U
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 53
NAG
V
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 54
NAG
V
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 55
BMA
V
3 11BETA-D-MANNOPYRANOSE
lig 56
MAN
V
4 11ALPHA-D-MANNOPYRANOSE
lig 57
MAN
V
5 11ALPHA-D-MANNOPYRANOSE
lig 58
MAN
V
6 11ALPHA-D-MANNOPYRANOSE
lig 59
MAN
V
7 11ALPHA-D-MANNOPYRANOSE
lig 60
MAN
V
8 11ALPHA-D-MANNOPYRANOSE
lig 61
NAG
A
501 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 62
NAG
A
502 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 63
CA
A
503 1CALCIUM ION
lig 64
NAG
B
501 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 65
NAG
B
502 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 66
CA
B
503 1CALCIUM ION
lig 67
NAG
C
501 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 68
NAG
C
502 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 69
CA
C
503 1CALCIUM ION
lig 70
NAG
D
501 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 71
NAG
D
502 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 72
CA
D
503 1CALCIUM ION