Analysis of Ligand-Protein Contacts in PDB entry:
9BKD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 145 ligands in PDB entry 9BKD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
A2M
A
27 232'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPH
lig 2
A2M
A
99 232'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPH
lig 3
OMU
A
116 21O2'-METHYLURIDINE 5'-MONOPHOSPHATE
lig 4
PSU
A
119 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 5
OMU
A
121 21O2'-METHYLURIDINE 5'-MONOPHOSPHATE
lig 6
A2M
A
159 232'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPH
lig 7
A2M
A
166 232'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPH
lig 8
OMC
A
174 21O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 9
A2M
A
484 232'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPH
lig 10
OMG
A
509 24O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 11
OMC
A
517 21O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 12
OMG
A
601 24O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 13
PSU
A
612 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 14
OMG
A
644 24O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 15
A2M
A
668 232'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPH
lig 16
OMG
A
683 24O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 17
5MU
A
814 215-METHYLURIDINE 5'-MONOPHOSPHATE
lig 18
PSU
A
822 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 19
PSU
A
823 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 20
A2M
A
1031 232'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPH
lig 21
PSU
A
1081 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 22
JMH
A
1219 213-METHYLCYTIDINE- 5'-MONOPHOSPHATE
lig 23
PSU
A
1243 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 24
OMG
A
1328 24O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 25
4AC
A
1337 23N(4)-ACETYLCYTIDINE-5'-MONOPHOSPHATE
lig 26
5MC
A
1374 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 27
OMG
A
1490 24O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 28
A2M
A
1678 232'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPH
lig 29
OMC
A
1703 21O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 30
UR3
A
1830 213-METHYLURIDINE-5'-MONOPHOSHATE
lig 31
6MZ
A
1832 23N6-METHYLADENOSINE-5'-MONOPHOSPHATE
lig 32
4AC
A
1842 23N(4)-ACETYLCYTIDINE-5'-MONOPHOSPHATE
lig 33
MA6
A
1850 246N-DIMETHYLADENOSINE-5'-MONOPHOSHATE
lig 34
MA6
A
1851 246N-DIMETHYLADENOSINE-5'-MONOPHOSHATE
lig 35
ZN
Q
201 1ZINC ION
lig 36
K
P
201 1POTASSIUM ION
lig 37
MG
A
1901 1MAGNESIUM ION
lig 38
K
A
1902 1POTASSIUM ION
lig 39
K
A
1903 1POTASSIUM ION
lig 40
K
A
1904 1POTASSIUM ION
lig 41
K
A
1905 1POTASSIUM ION
lig 42
K
A
1906 1POTASSIUM ION
lig 43
K
A
1907 1POTASSIUM ION
lig 44
K
A
1908 1POTASSIUM ION
lig 45
K
A
1909 1POTASSIUM ION
lig 46
K
A
1910 1POTASSIUM ION
lig 47
K
A
1911 1POTASSIUM ION
lig 48
K
A
1912 1POTASSIUM ION
lig 49
K
A
1913 1POTASSIUM ION
lig 50
K
A
1914 1POTASSIUM ION
lig 51
K
A
1915 1POTASSIUM ION
lig 52
K
A
1916 1POTASSIUM ION
lig 53
K
A
1917 1POTASSIUM ION
lig 54
K
A
1918 1POTASSIUM ION
lig 55
MG
A
1919 1MAGNESIUM ION
lig 56
MG
A
1920 1MAGNESIUM ION
lig 57
MG
A
1921 1MAGNESIUM ION
lig 58
MG
A
1922 1MAGNESIUM ION
lig 59
MG
A
1923 1MAGNESIUM ION
lig 60
MG
A
1924 1MAGNESIUM ION
lig 61
MG
A
1925 1MAGNESIUM ION
lig 62
MG
A
1926 1MAGNESIUM ION
lig 63
MG
A
1927 1MAGNESIUM ION
lig 64
MG
A
1928 1MAGNESIUM ION
lig 65
MG
A
1929 1MAGNESIUM ION
lig 66
MG
A
1930 1MAGNESIUM ION
lig 67
MG
A
1931 1MAGNESIUM ION
lig 68
MG
A
1932 1MAGNESIUM ION
lig 69
MG
A
1933 1MAGNESIUM ION
lig 70
MG
A
1934 1MAGNESIUM ION
lig 71
MG
A
1935 1MAGNESIUM ION
lig 72
MG
A
1936 1MAGNESIUM ION
lig 73
MG
A
1937 1MAGNESIUM ION
lig 74
MG
A
1938 1MAGNESIUM ION
lig 75
MG
A
1939 1MAGNESIUM ION
lig 76
MG
A
1940 1MAGNESIUM ION
lig 77
MG
A
1941 1MAGNESIUM ION
lig 78
MG
A
1942 1MAGNESIUM ION
lig 79
MG
A
1943 1MAGNESIUM ION
lig 80
MG
A
1944 1MAGNESIUM ION
lig 81
MG
A
1945 1MAGNESIUM ION
lig 82
MG
A
1946 1MAGNESIUM ION
lig 83
MG
A
1947 1MAGNESIUM ION
lig 84
MG
A
1948 1MAGNESIUM ION
lig 85
MG
A
1949 1MAGNESIUM ION
lig 86
MG
A
1950 1MAGNESIUM ION
lig 87
MG
A
1951 1MAGNESIUM ION
lig 88
MG
A
1952 1MAGNESIUM ION
lig 89
MG
A
1953 1MAGNESIUM ION
lig 90
MG
A
1954 1MAGNESIUM ION
lig 91
MG
A
1955 1MAGNESIUM ION
lig 92
MG
A
1956 1MAGNESIUM ION
lig 93
MG
A
1957 1MAGNESIUM ION
lig 94
MG
A
1958 1MAGNESIUM ION
lig 95
MG
A
1959 1MAGNESIUM ION
lig 96
MG
A
1960 1MAGNESIUM ION
lig 97
MG
A
1961 1MAGNESIUM ION
lig 98
MG
A
1962 1MAGNESIUM ION
lig 99
MG
A
1963 1MAGNESIUM ION
lig 100
MG
A
1964 1MAGNESIUM ION
lig 101
MG
A
1965 1MAGNESIUM ION
lig 102
MG
A
1966 1MAGNESIUM ION
lig 103
MG
A
1967 1MAGNESIUM ION
lig 104
MG
A
1968 1MAGNESIUM ION
lig 105
MG
A
1969 1MAGNESIUM ION
lig 106
MG
A
1970 1MAGNESIUM ION
lig 107
MG
A
1971 1MAGNESIUM ION
lig 108
MG
A
1972 1MAGNESIUM ION
lig 109
MG
A
1973 1MAGNESIUM ION
lig 110
MG
A
1974 1MAGNESIUM ION
lig 111
MG
A
1975 1MAGNESIUM ION
lig 112
MG
A
1976 1MAGNESIUM ION
lig 113
MG
A
1977 1MAGNESIUM ION
lig 114
MG
A
1978 1MAGNESIUM ION
lig 115
MG
A
1979 1MAGNESIUM ION
lig 116
MG
A
1980 1MAGNESIUM ION
lig 117
MG
A
1981 1MAGNESIUM ION
lig 118
MG
A
1982 1MAGNESIUM ION
lig 119
MG
A
1983 1MAGNESIUM ION
lig 120
MG
A
1984 1MAGNESIUM ION
lig 121
MG
A
1985 1MAGNESIUM ION
lig 122
MG
A
1986 1MAGNESIUM ION
lig 123
MG
A
1987 1MAGNESIUM ION
lig 124
MG
A
1988 1MAGNESIUM ION
lig 125
MG
A
1989 1MAGNESIUM ION
lig 126
MG
A
1990 1MAGNESIUM ION
lig 127
MG
A
1991 1MAGNESIUM ION
lig 128
MG
A
1992 1MAGNESIUM ION
lig 129
MG
A
1993 1MAGNESIUM ION
lig 130
MG
A
1994 1MAGNESIUM ION
lig 131
MG
A
1995 1MAGNESIUM ION
lig 132
MG
A
1996 1MAGNESIUM ION
lig 133
MG
A
1997 1MAGNESIUM ION
lig 134
MG
A
1998 1MAGNESIUM ION
lig 135
MG
A
1999 1MAGNESIUM ION
lig 136
MG
A
2000 1MAGNESIUM ION
lig 137
MG
A
2001 1MAGNESIUM ION
lig 138
MG
A
2002 1MAGNESIUM ION
lig 139
MG
A
2003 1MAGNESIUM ION
lig 140
MG
A
2004 1MAGNESIUM ION
lig 141
SPD
A
2005 10SPERMIDINE
lig 142
MG
f
201 1MAGNESIUM ION
lig 143
ZN
i
101 1ZINC ION
lig 144
K
i
102 1POTASSIUM ION
lig 145
ZN
k
201 1ZINC ION