Analysis of Ligand-Protein Contacts in PDB entry:
9D1T


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 30 ligands in PDB entry 9D1T. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
MLZ
A
10 10N-METHYL-LYSINE
lig 2
MLY
A
16 11N-DIMETHYL-LYSINE
lig 3
MLY
A
41 11N-DIMETHYL-LYSINE
lig 4
MLY
A
46 11N-DIMETHYL-LYSINE
lig 5
MLY
A
74 11N-DIMETHYL-LYSINE
lig 6
MLZ
A
92 10N-METHYL-LYSINE
lig 7
MLY
A
126 11N-DIMETHYL-LYSINE
lig 8
M3L
A
155 12N-TRIMETHYLLYSINE
lig 9
MLZ
A
199 10N-METHYL-LYSINE
lig 10
MLZ
A
334 10N-METHYL-LYSINE
lig 11
MLY
A
396 11N-DIMETHYL-LYSINE
lig 12
MLY
A
398 11N-DIMETHYL-LYSINE
lig 13
MLY
A
467 11N-DIMETHYL-LYSINE
lig 14
MLY
A
495 11N-DIMETHYL-LYSINE
lig 15
MLY
A
555 11N-DIMETHYL-LYSINE
lig 16
MLY
A
557 11N-DIMETHYL-LYSINE
lig 17
MLY
A
565 11N-DIMETHYL-LYSINE
lig 18
MPD
A
601 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 19
MPD
A
602 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 20
MPD
A
603 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 21
MPD
A
604 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 22
MPD
A
605 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 23
MPD
A
606 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 24
EDO
A
607 41,2-ETHANEDIOL
lig 25
EDO
A
608 41,2-ETHANEDIOL
lig 26
EDO
A
609 41,2-ETHANEDIOL
lig 27
EDO
A
610 41,2-ETHANEDIOL
lig 28
EDO
A
611 41,2-ETHANEDIOL
lig 29
EDO
A
612 41,2-ETHANEDIOL
lig 30
EDO
A
613 41,2-ETHANEDIOL