Analysis of Ligand-Protein Contacts in PDB entry:
9DMS


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 36 ligands in PDB entry 9DMS. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
H
3 11BETA-D-MANNOPYRANOSE
lig 4
MAN
H
4 11ALPHA-D-MANNOPYRANOSE
lig 5
MAN
H
5 11ALPHA-D-MANNOPYRANOSE
lig 6
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
I
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
BMA
I
3 11BETA-D-MANNOPYRANOSE
lig 9
MAN
I
4 11ALPHA-D-MANNOPYRANOSE
lig 10
MAN
I
5 11ALPHA-D-MANNOPYRANOSE
lig 11
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
J
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
BMA
J
3 11BETA-D-MANNOPYRANOSE
lig 14
MAN
J
4 11ALPHA-D-MANNOPYRANOSE
lig 15
MAN
J
5 11ALPHA-D-MANNOPYRANOSE
lig 16
NAG
K
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
NAG
K
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
BMA
K
3 11BETA-D-MANNOPYRANOSE
lig 19
MAN
K
4 11ALPHA-D-MANNOPYRANOSE
lig 20
MAN
K
5 11ALPHA-D-MANNOPYRANOSE
lig 21
NAG
L
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
NAG
L
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 23
BMA
L
3 11BETA-D-MANNOPYRANOSE
lig 24
MAN
L
4 11ALPHA-D-MANNOPYRANOSE
lig 25
BMA
L
5 11BETA-D-MANNOPYRANOSE
lig 26
CLR
C
501 28CHOLESTEROL
lig 27
POV
D
501 40 ENOYLOXY]PROPYL 2-(TRIMETHYLAMMONIO)ETHYL
lig 28
NAG
D
502 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 29
POV
D
503 52 ENOYLOXY]PROPYL 2-(TRIMETHYLAMMONIO)ETHYL
lig 30
CLR
D
504 28CHOLESTEROL
lig 31
CLR
D
505 28CHOLESTEROL
lig 32
NAG
B
501 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 33
CLR
B
502 28CHOLESTEROL
lig 34
CLR
B
503 28CHOLESTEROL
lig 35
POV
B
504 47 ENOYLOXY]PROPYL 2-(TRIMETHYLAMMONIO)ETHYL
lig 36
POV
B
505 44 ENOYLOXY]PROPYL 2-(TRIMETHYLAMMONIO)ETHYL