Analysis of Ligand-Protein Contacts in PDB entry:
9F5Y


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 54 ligands in PDB entry 9F5Y. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FES
A
301 4FE2/S2 (INORGANIC) CLUSTER
lig 2
FMN
B
501 31FLAVIN MONONUCLEOTIDE
lig 3
SF4
B
502 8IRON/SULFUR CLUSTER
lig 4
FES
C
801 4FE2/S2 (INORGANIC) CLUSTER
lig 5
SF4
C
802 8IRON/SULFUR CLUSTER
lig 6
SF4
C
803 8IRON/SULFUR CLUSTER
lig 7
SF4
F
201 8IRON/SULFUR CLUSTER
lig 8
SF4
G
301 8IRON/SULFUR CLUSTER
lig 9
SF4
G
302 8IRON/SULFUR CLUSTER
lig 10
PTY
G
303 43PHOSPHATIDYLETHANOLAMINE
lig 11
8Q1
J
200 35 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] DODECA
lig 12
NDP
P
401 48 PHOSPHATE
lig 13
UQ5
Q
301 38 EICOSA-2,6,10,14,18-PENTAENYL)-[1,4]BENZO
lig 14
PC7
Q
302 33 OXIDE
lig 15
3PH
R
401 321,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 16
PTY
R
402 34PHOSPHATIDYLETHANOLAMINE
lig 17
PC7
R
403 44 OXIDE
lig 18
PTY
R
404 44PHOSPHATIDYLETHANOLAMINE
lig 19
CDL
R
405 63CARDIOLIPIN
lig 20
PTY
R
406 40PHOSPHATIDYLETHANOLAMINE
lig 21
3PH
S
301 371,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 22
PTY
S
302 46PHOSPHATIDYLETHANOLAMINE
lig 23
PTY
T
501 50PHOSPHATIDYLETHANOLAMINE
lig 24
PGT
T
502 48 PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]E
lig 25
PC7
T
503 52 OXIDE
lig 26
PTY
T
504 28PHOSPHATIDYLETHANOLAMINE
lig 27
PGT
T
505 40 PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]E
lig 28
PTY
T
506 26PHOSPHATIDYLETHANOLAMINE
lig 29
3PH
V
601 421,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 30
3PH
V
602 411,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 31
CDL
V
603 64CARDIOLIPIN
lig 32
PTY
V
604 40PHOSPHATIDYLETHANOLAMINE
lig 33
PTY
V
605 50PHOSPHATIDYLETHANOLAMINE
lig 34
PTY
V
606 35PHOSPHATIDYLETHANOLAMINE
lig 35
CDL
W
701 95CARDIOLIPIN
lig 36
PGT
b
601 44 PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]E
lig 37
3PH
c
101 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 38
PTY
e
301 25PHOSPHATIDYLETHANOLAMINE
lig 39
PTY
e
302 43PHOSPHATIDYLETHANOLAMINE
lig 40
3PH
g
101 371,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 41
3PH
h
201 451,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 42
PTY
h
202 46PHOSPHATIDYLETHANOLAMINE
lig 43
CDL
h
203 77CARDIOLIPIN
lig 44
PGT
l
701 51 PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]E
lig 45
8Q1
r
200 35 BUTANOYL]-BETA-ALANYL}AMINO)ETHYL] DODECA
lig 46
COO
s
401 53CROTONYL COENZYME A
lig 47
ZN
s
402 1ZINC ION
lig 48
PC7
u
601 42 OXIDE
lig 49
CDL
u
602 83CARDIOLIPIN
lig 50
CDL
u
603 71CARDIOLIPIN
lig 51
3PH
w
201 451,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 52
CDL
x
101 92CARDIOLIPIN
lig 53
PTY
x
102 50PHOSPHATIDYLETHANOLAMINE
lig 54
CDL
y
201 55CARDIOLIPIN