Analysis of Ligand-Protein Contacts in PDB entry:
9LME


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 95 ligands in PDB entry 9LME. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
MAN
D
3 11ALPHA-D-MANNOPYRANOSE
lig 4
FUC
D
4 10ALPHA-L-FUCOPYRANOSE
lig 5
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
MAN
E
3 11ALPHA-D-MANNOPYRANOSE
lig 8
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
FUC
G
3 10ALPHA-L-FUCOPYRANOSE
lig 11
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
H
2 132-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
FUC
H
3 10ALPHA-L-FUCOPYRANOSE
lig 14
EDO
A
301 41,2-ETHANEDIOL
lig 15
EDO
A
302 41,2-ETHANEDIOL
lig 16
GOL
A
303 6GLYCEROL
lig 17
EDO
A
304 41,2-ETHANEDIOL
lig 18
GOL
A
305 6GLYCEROL
lig 19
PEG
A
306 7DI(HYDROXYETHYL)ETHER
lig 20
PEG
A
307 7DI(HYDROXYETHYL)ETHER
lig 21
PEG
A
308 7DI(HYDROXYETHYL)ETHER
lig 22
PEG
A
309 7DI(HYDROXYETHYL)ETHER
lig 23
PEG
A
310 7DI(HYDROXYETHYL)ETHER
lig 24
GOL
A
311 6GLYCEROL
lig 25
PEG
A
312 7DI(HYDROXYETHYL)ETHER
lig 26
PEG
A
313 7DI(HYDROXYETHYL)ETHER
lig 27
PEG
A
314 7DI(HYDROXYETHYL)ETHER
lig 28
MAN
A
315 12ALPHA-D-MANNOPYRANOSE
lig 29
MG
A
316 1MAGNESIUM ION
lig 30
MG
A
317 1MAGNESIUM ION
lig 31
MG
A
318 1MAGNESIUM ION
lig 32
MG
A
319 1MAGNESIUM ION
lig 33
MG
A
320 1MAGNESIUM ION
lig 34
MG
A
321 1MAGNESIUM ION
lig 35
MG
A
322 1MAGNESIUM ION
lig 36
MG
A
323 1MAGNESIUM ION
lig 37
EDO
A
324 41,2-ETHANEDIOL
lig 38
EDO
A
325 41,2-ETHANEDIOL
lig 39
EDO
A
326 41,2-ETHANEDIOL
lig 40
EDO
A
327 41,2-ETHANEDIOL
lig 41
EDO
A
328 41,2-ETHANEDIOL
lig 42
EDO
A
329 41,2-ETHANEDIOL
lig 43
EDO
A
330 41,2-ETHANEDIOL
lig 44
EDO
A
331 41,2-ETHANEDIOL
lig 45
EDO
A
332 41,2-ETHANEDIOL
lig 46
EDO
A
333 41,2-ETHANEDIOL
lig 47
EDO
A
334 41,2-ETHANEDIOL
lig 48
CA
A
335 1CALCIUM ION
lig 49
CA
A
336 1CALCIUM ION
lig 50
EDO
B
301 41,2-ETHANEDIOL
lig 51
GOL
B
302 6GLYCEROL
lig 52
GOL
B
303 6GLYCEROL
lig 53
PEG
B
304 7DI(HYDROXYETHYL)ETHER
lig 54
MG
B
305 1MAGNESIUM ION
lig 55
MG
B
306 1MAGNESIUM ION
lig 56
MG
B
307 1MAGNESIUM ION
lig 57
MG
B
308 1MAGNESIUM ION
lig 58
MG
B
309 1MAGNESIUM ION
lig 59
MG
B
310 1MAGNESIUM ION
lig 60
EDO
B
311 41,2-ETHANEDIOL
lig 61
EDO
B
312 41,2-ETHANEDIOL
lig 62
EDO
B
313 41,2-ETHANEDIOL
lig 63
EDO
B
314 41,2-ETHANEDIOL
lig 64
EDO
B
315 41,2-ETHANEDIOL
lig 65
EDO
B
316 41,2-ETHANEDIOL
lig 66
EDO
B
317 41,2-ETHANEDIOL
lig 67
EDO
B
318 41,2-ETHANEDIOL
lig 68
EDO
B
319 41,2-ETHANEDIOL
lig 69
EDO
B
320 41,2-ETHANEDIOL
lig 70
EDO
B
321 41,2-ETHANEDIOL
lig 71
EDO
B
322 41,2-ETHANEDIOL
lig 72
EDO
B
323 41,2-ETHANEDIOL
lig 73
EDO
B
324 41,2-ETHANEDIOL
lig 74
EDO
B
325 41,2-ETHANEDIOL
lig 75
EDO
B
326 41,2-ETHANEDIOL
lig 76
PO4
B
327 5PHOSPHATE ION
lig 77
CA
B
328 1CALCIUM ION
lig 78
CA
B
329 1CALCIUM ION
lig 79
CA
B
330 1CALCIUM ION
lig 80
MG
C
201 1MAGNESIUM ION
lig 81
MG
C
202 1MAGNESIUM ION
lig 82
MG
C
203 1MAGNESIUM ION
lig 83
EDO
C
204 41,2-ETHANEDIOL
lig 84
EDO
C
205 41,2-ETHANEDIOL
lig 85
EDO
C
206 41,2-ETHANEDIOL
lig 86
PEG
F
201 7DI(HYDROXYETHYL)ETHER
lig 87
EDO
F
202 41,2-ETHANEDIOL
lig 88
EDO
F
203 41,2-ETHANEDIOL
lig 89
GOL
F
204 6GLYCEROL
lig 90
PEG
F
205 7DI(HYDROXYETHYL)ETHER
lig 91
MG
F
206 1MAGNESIUM ION
lig 92
MG
F
207 1MAGNESIUM ION
lig 93
EDO
F
208 41,2-ETHANEDIOL
lig 94
EDO
F
209 41,2-ETHANEDIOL
lig 95
EDO
F
210 41,2-ETHANEDIOL