Analysis of Ligand-Protein Contacts in PDB entry:
9MD4


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 40 ligands in PDB entry 9MD4. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
M
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
M
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
M
3 11BETA-D-MANNOPYRANOSE
lig 4
MAN
M
4 11ALPHA-D-MANNOPYRANOSE
lig 5
NAG
M
5 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
MAN
M
6 11ALPHA-D-MANNOPYRANOSE
lig 7
NAG
N
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
N
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
BMA
N
3 11BETA-D-MANNOPYRANOSE
lig 10
MAN
N
4 11ALPHA-D-MANNOPYRANOSE
lig 11
NAG
N
5 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
MAN
N
6 11ALPHA-D-MANNOPYRANOSE
lig 13
NAG
O
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
NAG
O
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
BMA
O
3 11BETA-D-MANNOPYRANOSE
lig 16
MAN
O
4 11ALPHA-D-MANNOPYRANOSE
lig 17
NAG
O
5 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
MAN
O
6 11ALPHA-D-MANNOPYRANOSE
lig 19
NAG
P
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
NAG
P
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
BMA
P
3 11BETA-D-MANNOPYRANOSE
lig 22
MAN
P
4 11ALPHA-D-MANNOPYRANOSE
lig 23
NAG
P
5 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 24
MAN
P
6 11ALPHA-D-MANNOPYRANOSE
lig 25
NAG
A
501 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 26
NAG
A
502 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 27
CA
A
503 1CALCIUM ION
lig 28
NAG
A
504 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 29
NAG
B
501 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 30
NAG
B
502 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 31
CA
B
503 1CALCIUM ION
lig 32
NAG
B
504 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 33
NAG
C
501 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 34
NAG
C
502 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 35
CA
C
503 1CALCIUM ION
lig 36
NAG
C
504 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 37
NAG
D
501 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 38
NAG
D
502 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 39
CA
D
503 1CALCIUM ION
lig 40
NAG
D
504 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE