Analysis of Ligand-Protein Contacts in PDB entry:
9W7D


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 174 ligands in PDB entry 9W7D. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
OEX
A
401 10CA-MN4-O5 CLUSTER
lig 2
FE2
A
402 1FE (II) ION
lig 3
CL
A
403 1CHLORIDE ION
lig 4
CL
A
404 1CHLORIDE ION
lig 5
CLA
A
405 65CHLOROPHYLL A
lig 6
CLA
A
406 56CHLOROPHYLL A
lig 7
CLA
A
407 51CHLOROPHYLL A
lig 8
BCR
A
408 40BETA-CAROTENE
lig 9
SQD
A
409 32 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 10
PL9
A
410 55 BENZOQUINONE
lig 11
UNL
A
412 8UNKNOWN LIGAND
lig 12
CLA
A
413 65CHLOROPHYLL A
lig 13
BCT
A
414 4BICARBONATE ION
lig 14
LHG
A
415 311,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 15
CLA
B
601 42CHLOROPHYLL A
lig 16
CLA
B
602 65CHLOROPHYLL A
lig 17
CLA
B
603 65CHLOROPHYLL A
lig 18
CLA
B
604 65CHLOROPHYLL A
lig 19
CLA
B
605 65CHLOROPHYLL A
lig 20
CLA
B
606 65CHLOROPHYLL A
lig 21
CLA
B
607 65CHLOROPHYLL A
lig 22
CLA
B
608 65CHLOROPHYLL A
lig 23
CLA
B
609 65CHLOROPHYLL A
lig 24
CLA
B
610 65CHLOROPHYLL A
lig 25
CLA
B
611 65CHLOROPHYLL A
lig 26
CLA
B
612 65CHLOROPHYLL A
lig 27
CLA
B
613 54CHLOROPHYLL A
lig 28
CLA
B
614 65CHLOROPHYLL A
lig 29
CLA
B
615 45CHLOROPHYLL A
lig 30
BCR
B
616 40BETA-CAROTENE
lig 31
BCR
B
617 40BETA-CAROTENE
lig 32
LMG
B
618 451,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 33
UNL
B
619 13UNKNOWN LIGAND
lig 34
BCR
B
620 40BETA-CAROTENE
lig 35
CLA
B
621 65CHLOROPHYLL A
lig 36
LHG
B
622 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 37
UNL
B
623 8UNKNOWN LIGAND
lig 38
LMG
C
501 471,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 39
CLA
C
502 65CHLOROPHYLL A
lig 40
CLA
C
503 65CHLOROPHYLL A
lig 41
CLA
C
504 65CHLOROPHYLL A
lig 42
CLA
C
505 55CHLOROPHYLL A
lig 43
CLA
C
506 46CHLOROPHYLL A
lig 44
CLA
C
507 65CHLOROPHYLL A
lig 45
CLA
C
508 60CHLOROPHYLL A
lig 46
CLA
C
509 65CHLOROPHYLL A
lig 47
CLA
C
510 65CHLOROPHYLL A
lig 48
CLA
C
511 65CHLOROPHYLL A
lig 49
CLA
C
512 52CHLOROPHYLL A
lig 50
CLA
C
513 42CHLOROPHYLL A
lig 51
BCR
C
514 40BETA-CAROTENE
lig 52
DGD
C
515 52DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 53
DGD
C
516 50DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 54
UNL
C
517 14UNKNOWN LIGAND
lig 55
DGD
C
518 53DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 56
CLA
C
519 65CHLOROPHYLL A
lig 57
BCR
C
520 40BETA-CAROTENE
lig 58
PHO
D
401 64PHEOPHYTIN A
lig 59
PHO
D
402 64PHEOPHYTIN A
lig 60
CLA
D
403 65CHLOROPHYLL A
lig 61
CLA
D
404 45CHLOROPHYLL A
lig 62
PL9
D
405 55 BENZOQUINONE
lig 63
LHG
D
406 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 64
LHG
D
407 391,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 65
LMG
D
408 381,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 66
UNL
D
409 13UNKNOWN LIGAND
lig 67
UNL
D
410 6UNKNOWN LIGAND
lig 68
SQD
D
411 23 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 69
UNL
E
101 6UNKNOWN LIGAND
lig 70
BCR
F
101 40BETA-CAROTENE
lig 71
HEM
F
102 43PROTOPORPHYRIN IX CONTAINING FE
lig 72
RRX
H
101 41(3R)-BETA,BETA-CAROTEN-3-OL
lig 73
DGD
H
102 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 74
UNL
H
103 6UNKNOWN LIGAND
lig 75
UNL
I
101 6UNKNOWN LIGAND
lig 76
LMT
J
101 24DODECYL-BETA-D-MALTOSIDE
lig 77
UNL
K
101 13UNKNOWN LIGAND
lig 78
BCR
K
102 40BETA-CAROTENE
lig 79
BCR
K
103 40BETA-CAROTENE
lig 80
LHG
L
101 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 81
LMT
M
101 35DODECYL-BETA-D-MALTOSIDE
lig 82
CA
O
301 1CALCIUM ION
lig 83
UNL
T
101 5UNKNOWN LIGAND
lig 84
BCR
T
102 40BETA-CAROTENE
lig 85
LMT
T
103 35DODECYL-BETA-D-MALTOSIDE
lig 86
HEC
V
201 43HEME C
lig 87
UNL
X
101 9UNKNOWN LIGAND
lig 88
OEX
a
401 10CA-MN4-O5 CLUSTER
lig 89
FE2
a
402 1FE (II) ION
lig 90
CL
a
403 1CHLORIDE ION
lig 91
CL
a
404 1CHLORIDE ION
lig 92
CLA
a
405 65CHLOROPHYLL A
lig 93
CLA
a
406 56CHLOROPHYLL A
lig 94
CLA
a
407 51CHLOROPHYLL A
lig 95
BCR
a
408 40BETA-CAROTENE
lig 96
SQD
a
409 32 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 97
PL9
a
410 55 BENZOQUINONE
lig 98
UNL
a
411 8UNKNOWN LIGAND
lig 99
CLA
a
413 65CHLOROPHYLL A
lig 100
BCT
a
414 4BICARBONATE ION
lig 101
LHG
a
415 311,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 102
CLA
b
601 42CHLOROPHYLL A
lig 103
CLA
b
602 65CHLOROPHYLL A
lig 104
CLA
b
603 65CHLOROPHYLL A
lig 105
CLA
b
604 65CHLOROPHYLL A
lig 106
CLA
b
605 65CHLOROPHYLL A
lig 107
CLA
b
606 65CHLOROPHYLL A
lig 108
CLA
b
607 65CHLOROPHYLL A
lig 109
CLA
b
608 65CHLOROPHYLL A
lig 110
CLA
b
609 65CHLOROPHYLL A
lig 111
CLA
b
610 65CHLOROPHYLL A
lig 112
CLA
b
611 65CHLOROPHYLL A
lig 113
CLA
b
612 65CHLOROPHYLL A
lig 114
CLA
b
613 54CHLOROPHYLL A
lig 115
CLA
b
614 65CHLOROPHYLL A
lig 116
CLA
b
615 45CHLOROPHYLL A
lig 117
BCR
b
616 40BETA-CAROTENE
lig 118
BCR
b
617 40BETA-CAROTENE
lig 119
LMG
b
618 451,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 120
UNL
b
619 13UNKNOWN LIGAND
lig 121
BCR
b
620 40BETA-CAROTENE
lig 122
CLA
b
621 65CHLOROPHYLL A
lig 123
LHG
b
622 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 124
UNL
b
623 8UNKNOWN LIGAND
lig 125
LMG
c
501 471,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 126
CLA
c
502 65CHLOROPHYLL A
lig 127
CLA
c
503 65CHLOROPHYLL A
lig 128
CLA
c
504 65CHLOROPHYLL A
lig 129
CLA
c
505 55CHLOROPHYLL A
lig 130
CLA
c
506 46CHLOROPHYLL A
lig 131
CLA
c
507 65CHLOROPHYLL A
lig 132
CLA
c
508 60CHLOROPHYLL A
lig 133
CLA
c
509 65CHLOROPHYLL A
lig 134
CLA
c
510 65CHLOROPHYLL A
lig 135
CLA
c
511 65CHLOROPHYLL A
lig 136
CLA
c
512 52CHLOROPHYLL A
lig 137
CLA
c
513 42CHLOROPHYLL A
lig 138
BCR
c
514 40BETA-CAROTENE
lig 139
DGD
c
515 52DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 140
DGD
c
516 50DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 141
UNL
c
517 14UNKNOWN LIGAND
lig 142
DGD
c
518 53DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 143
CLA
c
519 65CHLOROPHYLL A
lig 144
BCR
c
520 40BETA-CAROTENE
lig 145
PHO
d
401 64PHEOPHYTIN A
lig 146
PHO
d
402 64PHEOPHYTIN A
lig 147
CLA
d
403 65CHLOROPHYLL A
lig 148
CLA
d
404 45CHLOROPHYLL A
lig 149
PL9
d
405 55 BENZOQUINONE
lig 150
LHG
d
406 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 151
LHG
d
407 391,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 152
LMG
d
408 381,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 153
UNL
d
409 13UNKNOWN LIGAND
lig 154
UNL
d
410 6UNKNOWN LIGAND
lig 155
SQD
d
411 23 GLUCOPYRANOSYL]-SN-GLYCEROL
lig 156
UNL
e
101 6UNKNOWN LIGAND
lig 157
BCR
f
101 40BETA-CAROTENE
lig 158
HEM
f
102 43PROTOPORPHYRIN IX CONTAINING FE
lig 159
RRX
h
101 41(3R)-BETA,BETA-CAROTEN-3-OL
lig 160
DGD
h
102 62DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 161
UNL
h
103 6UNKNOWN LIGAND
lig 162
UNL
i
101 6UNKNOWN LIGAND
lig 163
LMT
j
101 24DODECYL-BETA-D-MALTOSIDE
lig 164
UNL
k
101 13UNKNOWN LIGAND
lig 165
BCR
k
102 40BETA-CAROTENE
lig 166
BCR
k
103 40BETA-CAROTENE
lig 167
LHG
l
101 491,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 168
LMT
m
101 35DODECYL-BETA-D-MALTOSIDE
lig 169
CA
o
301 1CALCIUM ION
lig 170
LMT
t
101 35DODECYL-BETA-D-MALTOSIDE
lig 171
UNL
t
102 5UNKNOWN LIGAND
lig 172
BCR
t
103 40BETA-CAROTENE
lig 173
HEC
v
201 43HEME C
lig 174
UNL
x
101 9UNKNOWN LIGAND