Analysis of Ligand-Protein Contacts in PDB entry:
9BPB


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 67 ligands in PDB entry 9BPB. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
CDL
A
501 55CARDIOLIPIN
lig 2
6PH
C
401 40 PENTADECANOATE
lig 3
8PE
C
402 26 (TETRADECANOYLOXY)PROPYL OCTADECANOATE
lig 4
CN5
C
403 32 PENTADECANOATE
lig 5
UQ6
C
404 26 22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZE
lig 6
HEM
C
405 43PROTOPORPHYRIN IX CONTAINING FE
lig 7
9PE
C
406 33 [(HEPTANOYLOXY)METHYL]ETHYL OCTADECANOATE
lig 8
HEM
C
407 43PROTOPORPHYRIN IX CONTAINING FE
lig 9
UQ6
C
408 43 22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZE
lig 10
PEF
D
401 40DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE
lig 11
HEC
D
402 43HEME C
lig 12
CDL
D
403 60CARDIOLIPIN
lig 13
FES
E
301 4FE2/S2 (INORGANIC) CLUSTER
lig 14
CDL
E
302 42CARDIOLIPIN
lig 15
CDL
H
101 53CARDIOLIPIN
lig 16
PCF
H
102 321,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE
lig 17
PTY
I
101 32PHOSPHATIDYLETHANOLAMINE
lig 18
PCF
I
102 321,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE
lig 19
PEF
J
101 29DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE
lig 20
HEA
a
601 60HEME-A
lig 21
CU
a
602 1COPPER (II) ION
lig 22
HEA
a
603 60HEME-A
lig 23
PTY
a
604 32PHOSPHATIDYLETHANOLAMINE
lig 24
CA
a
605 1CALCIUM ION
lig 25
CN3
a
606 46 PENTAOXA-5,11-DIPHOSPHANONADEC-1-YL UNDEC
lig 26
PEF
a
607 43DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE
lig 27
MG
b
301 1MAGNESIUM ION
lig 28
PTY
b
302 34PHOSPHATIDYLETHANOLAMINE
lig 29
CUA
b
303 2DINUCLEAR COPPER ION
lig 30
PTY
b
304 35PHOSPHATIDYLETHANOLAMINE
lig 31
PTY
c
301 40PHOSPHATIDYLETHANOLAMINE
lig 32
ZN
d
201 1ZINC ION
lig 33
PCF
k
201 431,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE
lig 34
PCF
l
101 371,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE
lig 35
CDL
K
501 55CARDIOLIPIN
lig 36
6PH
M
401 40 PENTADECANOATE
lig 37
8PE
M
402 26 (TETRADECANOYLOXY)PROPYL OCTADECANOATE
lig 38
UQ6
M
403 26 22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZE
lig 39
HEM
M
404 43PROTOPORPHYRIN IX CONTAINING FE
lig 40
9PE
M
405 33 [(HEPTANOYLOXY)METHYL]ETHYL OCTADECANOATE
lig 41
HEM
M
406 43PROTOPORPHYRIN IX CONTAINING FE
lig 42
UQ6
M
407 43 22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZE
lig 43
PEF
N
401 40DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE
lig 44
HEC
N
402 43HEME C
lig 45
CDL
N
403 60CARDIOLIPIN
lig 46
FES
O
301 4FE2/S2 (INORGANIC) CLUSTER
lig 47
CDL
O
302 42CARDIOLIPIN
lig 48
CDL
R
101 53CARDIOLIPIN
lig 49
PCF
R
102 321,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE
lig 50
PTY
S
101 32PHOSPHATIDYLETHANOLAMINE
lig 51
PCF
S
102 321,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE
lig 52
PEF
T
101 29DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE
lig 53
HEA
m
601 60HEME-A
lig 54
CU
m
602 1COPPER (II) ION
lig 55
HEA
m
603 60HEME-A
lig 56
PTY
m
604 32PHOSPHATIDYLETHANOLAMINE
lig 57
CA
m
605 1CALCIUM ION
lig 58
CN3
m
606 46 PENTAOXA-5,11-DIPHOSPHANONADEC-1-YL UNDEC
lig 59
PEF
m
607 43DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE
lig 60
MG
n
301 1MAGNESIUM ION
lig 61
PTY
n
302 34PHOSPHATIDYLETHANOLAMINE
lig 62
CUA
n
303 2DINUCLEAR COPPER ION
lig 63
PTY
n
304 35PHOSPHATIDYLETHANOLAMINE
lig 64
PTY
o
301 40PHOSPHATIDYLETHANOLAMINE
lig 65
ZN
p
201 1ZINC ION
lig 66
PCF
w
201 431,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE
lig 67
PCF
x
101 371,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE