Analysis of Ligand-Protein Contacts in PDB entry:
9D1M


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 31 ligands in PDB entry 9D1M. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
MLY
A
10 11N-DIMETHYL-LYSINE
lig 2
MLY
A
16 11N-DIMETHYL-LYSINE
lig 3
MLY
A
41 11N-DIMETHYL-LYSINE
lig 4
MLY
A
46 11N-DIMETHYL-LYSINE
lig 5
MLY
A
74 11N-DIMETHYL-LYSINE
lig 6
MLZ
A
92 10N-METHYL-LYSINE
lig 7
MLY
A
126 11N-DIMETHYL-LYSINE
lig 8
M3L
A
155 12N-TRIMETHYLLYSINE
lig 9
MLY
A
265 11N-DIMETHYL-LYSINE
lig 10
MLZ
A
286 10N-METHYL-LYSINE
lig 11
MLY
A
306 11N-DIMETHYL-LYSINE
lig 12
MLY
A
334 11N-DIMETHYL-LYSINE
lig 13
MLZ
A
360 10N-METHYL-LYSINE
lig 14
MLY
A
396 11N-DIMETHYL-LYSINE
lig 15
MLY
A
398 11N-DIMETHYL-LYSINE
lig 16
MLY
A
485 11N-DIMETHYL-LYSINE
lig 17
MLY
A
495 11N-DIMETHYL-LYSINE
lig 18
MLY
A
555 11N-DIMETHYL-LYSINE
lig 19
MLY
A
557 11N-DIMETHYL-LYSINE
lig 20
MLY
A
565 11N-DIMETHYL-LYSINE
lig 21
EDO
A
601 41,2-ETHANEDIOL
lig 22
EDO
A
602 41,2-ETHANEDIOL
lig 23
GOL
A
603 6GLYCEROL
lig 24
MPD
A
604 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 25
EDO
A
605 41,2-ETHANEDIOL
lig 26
EDO
A
606 41,2-ETHANEDIOL
lig 27
MPD
A
607 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 28
MPD
A
608 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 29
MPD
A
609 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 30
EDO
A
610 41,2-ETHANEDIOL
lig 31
EDO
A
611 41,2-ETHANEDIOL