Analysis of Ligand-Protein Contacts in PDB entry:
9D1N


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 33 ligands in PDB entry 9D1N. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
MLZ
A
10 10N-METHYL-LYSINE
lig 2
MLY
A
16 11N-DIMETHYL-LYSINE
lig 3
MLZ
A
21 10N-METHYL-LYSINE
lig 4
MLY
A
41 11N-DIMETHYL-LYSINE
lig 5
MLZ
A
43 10N-METHYL-LYSINE
lig 6
MLY
A
46 11N-DIMETHYL-LYSINE
lig 7
MLY
A
74 11N-DIMETHYL-LYSINE
lig 8
MLZ
A
92 10N-METHYL-LYSINE
lig 9
MLY
A
126 11N-DIMETHYL-LYSINE
lig 10
MLY
A
155 11N-DIMETHYL-LYSINE
lig 11
MLZ
A
199 10N-METHYL-LYSINE
lig 12
MLZ
A
286 10N-METHYL-LYSINE
lig 13
MLY
A
327 11N-DIMETHYL-LYSINE
lig 14
MLY
A
334 11N-DIMETHYL-LYSINE
lig 15
MLY
A
396 11N-DIMETHYL-LYSINE
lig 16
MLY
A
398 11N-DIMETHYL-LYSINE
lig 17
MLY
A
485 11N-DIMETHYL-LYSINE
lig 18
MLZ
A
495 10N-METHYL-LYSINE
lig 19
MLZ
A
531 10N-METHYL-LYSINE
lig 20
MLY
A
537 11N-DIMETHYL-LYSINE
lig 21
MLY
A
555 11N-DIMETHYL-LYSINE
lig 22
MLZ
A
557 10N-METHYL-LYSINE
lig 23
MLY
A
565 11N-DIMETHYL-LYSINE
lig 24
MPD
A
601 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 25
MPD
A
602 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 26
EDO
A
603 41,2-ETHANEDIOL
lig 27
BTB
A
604 14 PROPANE-1,3-DIOL
lig 28
EDO
A
605 41,2-ETHANEDIOL
lig 29
PEG
A
606 7DI(HYDROXYETHYL)ETHER
lig 30
MPD
A
607 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 31
MPD
A
608 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 32
MPD
A
609 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 33
ACT
A
610 4ACETATE ION