Analysis of Ligand-Protein Contacts in PDB entry:
9D3D


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 132 ligands in PDB entry 9D3D. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
TYS
H
100 16O-SULFO-L-TYROSINE
lig 2
TYS
H
100 16O-SULFO-L-TYROSINE
lig 3
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
BMA
G
3 11BETA-D-MANNOPYRANOSE
lig 12
MAN
G
4 11ALPHA-D-MANNOPYRANOSE
lig 13
MAN
G
5 11ALPHA-D-MANNOPYRANOSE
lig 14
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
NAG
I
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
BMA
I
3 11BETA-D-MANNOPYRANOSE
lig 17
MAN
I
4 11ALPHA-D-MANNOPYRANOSE
lig 18
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
NAG
J
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
NAG
K
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
NAG
K
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
NAG
M
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 23
NAG
M
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 24
BMA
M
3 11BETA-D-MANNOPYRANOSE
lig 25
NAG
N
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 26
NAG
N
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 27
NAG
O
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 28
NAG
O
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 29
NAG
P
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 30
NAG
P
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 31
BMA
P
3 11BETA-D-MANNOPYRANOSE
lig 32
MAN
P
4 11ALPHA-D-MANNOPYRANOSE
lig 33
MAN
P
5 11ALPHA-D-MANNOPYRANOSE
lig 34
MAN
P
6 11ALPHA-D-MANNOPYRANOSE
lig 35
NAG
Q
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 36
NAG
Q
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 37
BMA
Q
3 11BETA-D-MANNOPYRANOSE
lig 38
NAG
R
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 39
NAG
R
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 40
BMA
R
3 11BETA-D-MANNOPYRANOSE
lig 41
MAN
R
4 11ALPHA-D-MANNOPYRANOSE
lig 42
MAN
R
5 11ALPHA-D-MANNOPYRANOSE
lig 43
MAN
R
6 11ALPHA-D-MANNOPYRANOSE
lig 44
MAN
R
7 11ALPHA-D-MANNOPYRANOSE
lig 45
NAG
S
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 46
NAG
S
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 47
NAG
T
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 48
NAG
T
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 49
NAG
U
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 50
NAG
U
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 51
NAG
V
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 52
NAG
V
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 53
NAG
W
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 54
NAG
W
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 55
BMA
W
3 11BETA-D-MANNOPYRANOSE
lig 56
NAG
X
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 57
NAG
X
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 58
NAG
Y
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 59
NAG
Y
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 60
BMA
Y
3 11BETA-D-MANNOPYRANOSE
lig 61
NAG
Z
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 62
NAG
Z
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 63
NAG
d
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 64
NAG
d
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 65
NAG
e
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 66
NAG
e
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 67
NAG
f
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 68
NAG
f
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 69
NAG
g
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 70
NAG
g
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 71
NAG
h
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 72
NAG
h
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 73
BMA
h
3 11BETA-D-MANNOPYRANOSE
lig 74
MAN
h
4 11ALPHA-D-MANNOPYRANOSE
lig 75
MAN
h
5 11ALPHA-D-MANNOPYRANOSE
lig 76
NAG
i
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 77
NAG
i
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 78
NAG
j
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 79
NAG
j
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 80
NAG
k
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 81
NAG
k
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 82
NAG
l
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 83
NAG
l
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 84
BMA
l
3 11BETA-D-MANNOPYRANOSE
lig 85
MAN
l
4 11ALPHA-D-MANNOPYRANOSE
lig 86
NAG
m
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 87
NAG
m
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 88
BMA
m
3 11BETA-D-MANNOPYRANOSE
lig 89
NAG
n
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 90
NAG
n
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 91
NAG
o
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 92
NAG
o
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 93
NAG
p
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 94
NAG
p
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 95
BMA
p
3 11BETA-D-MANNOPYRANOSE
lig 96
MAN
p
4 11ALPHA-D-MANNOPYRANOSE
lig 97
MAN
p
5 11ALPHA-D-MANNOPYRANOSE
lig 98
MAN
p
6 11ALPHA-D-MANNOPYRANOSE
lig 99
NAG
q
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 100
NAG
q
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 101
BMA
q
3 11BETA-D-MANNOPYRANOSE
lig 102
NAG
r
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 103
NAG
r
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 104
BMA
r
3 11BETA-D-MANNOPYRANOSE
lig 105
MAN
r
4 11ALPHA-D-MANNOPYRANOSE
lig 106
MAN
r
5 11ALPHA-D-MANNOPYRANOSE
lig 107
MAN
r
6 11ALPHA-D-MANNOPYRANOSE
lig 108
NAG
C
601 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 109
NAG
C
602 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 110
NAG
C
603 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 111
NAG
C
604 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 112
NAG
C
605 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 113
NAG
C
606 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 114
NAG
A
601 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 115
NAG
A
602 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 116
NAG
A
603 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 117
NAG
A
604 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 118
NAG
A
605 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 119
NAG
A
606 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 120
NAG
A
607 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 121
PO4
A
608 5PHOSPHATE ION
lig 122
NAG
B
601 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 123
NAG
B
602 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 124
NAG
B
603 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 125
NAG
B
604 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 126
NAG
B
605 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 127
NAG
c
701 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 128
NAG
c
702 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 129
NAG
a
701 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 130
NAG
a
702 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 131
NAG
b
701 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 132
NAG
b
702 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE