Analysis of Ligand-Protein Contacts in PDB entry:
9DBM


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 31 ligands in PDB entry 9DBM. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
B
3 11BETA-D-MANNOPYRANOSE
lig 4
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
BMA
C
3 11BETA-D-MANNOPYRANOSE
lig 7
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
BMA
D
3 11BETA-D-MANNOPYRANOSE
lig 10
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
BMA
E
3 11BETA-D-MANNOPYRANOSE
lig 13
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
BMA
F
3 11BETA-D-MANNOPYRANOSE
lig 16
CLR
A
2001 28CHOLESTEROL
lig 17
CLR
A
2002 28CHOLESTEROL
lig 18
CLR
A
2003 28CHOLESTEROL
lig 19
CLR
A
2004 28CHOLESTEROL
lig 20
PCW
A
2005 471,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 21
LPE
A
2006 231-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 22
LPE
A
2007 231-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 23
PCW
A
2008 411,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 24
PCW
A
2009 401,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 25
LPE
A
2010 341-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 26
LPE
A
2011 221-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 27
LPE
A
2012 211-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 28
LPE
A
2013 251-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 29
P5S
A
2014 45 PROPYL]OXY}(HYDROXY)PHOSPHORYL]-L-SERINE
lig 30
P5S
A
2015 49 PROPYL]OXY}(HYDROXY)PHOSPHORYL]-L-SERINE
lig 31
CLR
A
2016 28CHOLESTEROL