Analysis of Ligand-Protein Contacts in PDB entry:
9DXX


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 41 ligands in PDB entry 9DXX. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
7YO
E
0 8(2R)-5-OXIDANYLIDENEPYRROLIDINE-2-CARBOXYL
lig 2
F9D
E
1 7(2R)-2-AMINOPENT-4-YNOIC ACID
lig 3
DAR
E
2 11D-ARGININE
lig 4
DPN
E
3 11D-PHENYLALANINE
lig 5
DCY
E
4 6D-CYSTEINE
lig 6
DPR
E
5 7D-PROLINE
lig 7
DSN
E
6 6D-SERINE
lig 8
DIL
E
7 8D-ISOLEUCINE
lig 9
KW4
E
8 95-METHYL-D-NORLEUCINE
lig 10
DLY
E
9 9D-LYSINE
lig 11
DLY
E
10 9D-LYSINE
lig 12
DCY
E
11 6D-CYSTEINE
lig 13
DAR
E
12 11D-ARGININE
lig 14
DAR
E
13 11D-ARGININE
lig 15
DAS
E
14 8D-ASPARTIC ACID
lig 16
DSN
E
15 6D-SERINE
lig 17
DAS
E
16 8D-ASPARTIC ACID
lig 18
DCY
E
17 6D-CYSTEINE
lig 19
DPR
E
18 7D-PROLINE
lig 20
HMF
E
20 122-AMINO-4-PHENYL-BUTYRIC ACID
lig 21
DCY
E
21 6D-CYSTEINE
lig 22
DIL
E
22 8D-ISOLEUCINE
lig 23
DCY
E
23 6D-CYSTEINE
lig 24
DLY
E
24 9D-LYSINE
lig 25
DSG
E
26 8D-ASPARAGINE
lig 26
DTY
E
28 12D-TYROSINE
lig 27
DCY
E
29 6D-CYSTEINE
lig 28
NAG
L
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 29
NAG
L
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 30
BMA
L
3 11BETA-D-MANNOPYRANOSE
lig 31
MAN
L
4 11ALPHA-D-MANNOPYRANOSE
lig 32
MAN
L
5 11ALPHA-D-MANNOPYRANOSE
lig 33
FUC
L
6 10ALPHA-L-FUCOPYRANOSE
lig 34
FUC
L
7 10ALPHA-L-FUCOPYRANOSE
lig 35
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 36
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 37
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 38
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 39
NAG
A
401 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 40
TOE
B
201 112-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL
lig 41
K
E
101 1POTASSIUM ION