Analysis of Ligand-Protein Contacts in PDB entry:
9F41


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 112 ligands in PDB entry 9F41. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
E
3 11BETA-D-MANNOPYRANOSE
lig 4
MAN
E
4 11ALPHA-D-MANNOPYRANOSE
lig 5
MAN
E
5 11ALPHA-D-MANNOPYRANOSE
lig 6
MAN
E
6 11ALPHA-D-MANNOPYRANOSE
lig 7
MAN
E
7 11ALPHA-D-MANNOPYRANOSE
lig 8
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
BMA
F
3 11BETA-D-MANNOPYRANOSE
lig 11
MAN
F
4 11ALPHA-D-MANNOPYRANOSE
lig 12
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
BMA
G
3 11BETA-D-MANNOPYRANOSE
lig 15
MAN
G
4 11ALPHA-D-MANNOPYRANOSE
lig 16
MAN
G
5 11ALPHA-D-MANNOPYRANOSE
lig 17
MAN
G
6 11ALPHA-D-MANNOPYRANOSE
lig 18
MAN
G
7 11ALPHA-D-MANNOPYRANOSE
lig 19
MAN
G
8 11ALPHA-D-MANNOPYRANOSE
lig 20
MAN
G
9 11ALPHA-D-MANNOPYRANOSE
lig 21
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 23
BMA
H
3 11BETA-D-MANNOPYRANOSE
lig 24
MAN
H
4 11ALPHA-D-MANNOPYRANOSE
lig 25
MAN
H
5 11ALPHA-D-MANNOPYRANOSE
lig 26
MAN
H
6 11ALPHA-D-MANNOPYRANOSE
lig 27
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 28
NAG
I
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 29
BMA
I
3 11BETA-D-MANNOPYRANOSE
lig 30
MAN
I
4 11ALPHA-D-MANNOPYRANOSE
lig 31
MAN
I
5 11ALPHA-D-MANNOPYRANOSE
lig 32
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 33
NAG
J
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 34
BMA
J
3 11BETA-D-MANNOPYRANOSE
lig 35
MAN
J
4 11ALPHA-D-MANNOPYRANOSE
lig 36
NAG
M
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 37
NAG
M
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 38
BMA
M
3 11BETA-D-MANNOPYRANOSE
lig 39
MAN
M
4 11ALPHA-D-MANNOPYRANOSE
lig 40
MAN
M
5 11ALPHA-D-MANNOPYRANOSE
lig 41
MAN
M
6 11ALPHA-D-MANNOPYRANOSE
lig 42
NAG
K
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 43
NAG
K
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 44
BMA
K
3 11BETA-D-MANNOPYRANOSE
lig 45
MAN
K
4 11ALPHA-D-MANNOPYRANOSE
lig 46
MAN
K
5 11ALPHA-D-MANNOPYRANOSE
lig 47
NAG
L
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 48
NAG
L
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 49
BMA
L
3 11BETA-D-MANNOPYRANOSE
lig 50
MAN
L
4 11ALPHA-D-MANNOPYRANOSE
lig 51
NAG
N
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 52
NAG
N
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 53
BMA
N
3 11BETA-D-MANNOPYRANOSE
lig 54
MAN
N
4 11ALPHA-D-MANNOPYRANOSE
lig 55
MAN
N
5 11ALPHA-D-MANNOPYRANOSE
lig 56
MAN
N
6 11ALPHA-D-MANNOPYRANOSE
lig 57
MAN
N
7 11ALPHA-D-MANNOPYRANOSE
lig 58
NAG
O
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 59
NAG
O
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 60
BMA
O
3 11BETA-D-MANNOPYRANOSE
lig 61
MAN
O
4 11ALPHA-D-MANNOPYRANOSE
lig 62
NAG
P
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 63
NAG
P
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 64
BMA
P
3 11BETA-D-MANNOPYRANOSE
lig 65
MAN
P
4 11ALPHA-D-MANNOPYRANOSE
lig 66
CLR
A
301 28CHOLESTEROL
lig 67
ZN
A
302 1ZINC ION
lig 68
SO4
A
303 5SULFATE ION
lig 69
MPD
A
304 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 70
PEG
A
305 7DI(HYDROXYETHYL)ETHER
lig 71
MPD
A
306 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 72
PEG
A
307 7DI(HYDROXYETHYL)ETHER
lig 73
SO4
A
308 5SULFATE ION
lig 74
SO4
A
309 5SULFATE ION
lig 75
ZN
A
310 1ZINC ION
lig 76
ZN
A
311 1ZINC ION
lig 77
ZN
A
312 1ZINC ION
lig 78
CLR
B
301 28CHOLESTEROL
lig 79
ZN
B
302 1ZINC ION
lig 80
ZN
B
303 1ZINC ION
lig 81
ZN
B
304 1ZINC ION
lig 82
ZN
B
305 1ZINC ION
lig 83
ZN
B
306 1ZINC ION
lig 84
SO4
B
307 5SULFATE ION
lig 85
SO4
B
308 5SULFATE ION
lig 86
ZN
B
309 1ZINC ION
lig 87
ZN
B
310 1ZINC ION
lig 88
CLR
C
301 28CHOLESTEROL
lig 89
ZN
C
302 1ZINC ION
lig 90
ZN
C
303 1ZINC ION
lig 91
SO4
C
304 5SULFATE ION
lig 92
ZN
C
305 1ZINC ION
lig 93
ZN
C
306 1ZINC ION
lig 94
PEG
C
307 7DI(HYDROXYETHYL)ETHER
lig 95
PEG
C
308 7DI(HYDROXYETHYL)ETHER
lig 96
PEG
C
309 7DI(HYDROXYETHYL)ETHER
lig 97
SO4
C
310 5SULFATE ION
lig 98
ZN
C
311 1ZINC ION
lig 99
ZN
C
312 1ZINC ION
lig 100
ZN
C
313 1ZINC ION
lig 101
ZN
C
314 1ZINC ION
lig 102
ZN
C
315 1ZINC ION
lig 103
CLR
D
301 28CHOLESTEROL
lig 104
ZN
D
302 1ZINC ION
lig 105
ZN
D
303 1ZINC ION
lig 106
SO4
D
304 5SULFATE ION
lig 107
SO4
D
305 5SULFATE ION
lig 108
ZN
D
306 1ZINC ION
lig 109
ZN
D
307 1ZINC ION
lig 110
ZN
D
308 1ZINC ION
lig 111
SO4
D
309 5SULFATE ION
lig 112
ZN
D
310 1ZINC ION