Analysis of Ligand-Protein Contacts in PDB entry:
9GAE


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 200 ligands in PDB entry 9GAE. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
A
1 10N-FORMYLMETHIONINE
lig 2
2MR
D
65 13N3, N4-DIMETHYLARGININE
lig 3
FME
J
1 10N-FORMYLMETHIONINE
lig 4
FME
L
1 10N-FORMYLMETHIONINE
lig 5
FME
M
1 10N-FORMYLMETHIONINE
lig 6
FME
q
1 10N-FORMYLMETHIONINE
lig 7
3PE
A
201 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 8
PGT
A
202 51 PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]E
lig 9
DU0
A
203 37 YL]OXYETHYL]PROPANE-1,3-DIOL
lig 10
SF4
B
1001 8IRON/SULFUR CLUSTER
lig 11
U10
B
1002 63UBIQUINONE-10
lig 12
PC1
D
1001 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 13
CA
D
1002 1CALCIUM ION
lig 14
FES
E
401 4FE2/S2 (INORGANIC) CLUSTER
lig 15
SF4
F
501 8IRON/SULFUR CLUSTER
lig 16
FMN
F
502 31FLAVIN MONONUCLEOTIDE
lig 17
FES
G
701 4FE2/S2 (INORGANIC) CLUSTER
lig 18
SF4
G
702 8IRON/SULFUR CLUSTER
lig 19
SF4
G
703 8IRON/SULFUR CLUSTER
lig 20
DU0
H
401 37 YL]OXYETHYL]PROPANE-1,3-DIOL
lig 21
PC1
H
402 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 22
PC1
H
403 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 23
3PE
H
404 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 24
3PE
H
405 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 25
PGT
H
406 51 PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]E
lig 26
3PE
H
407 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 27
3PE
H
408 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 28
3PH
H
409 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 29
P5S
I
201 54 PROPYL]OXY}(HYDROXY)PHOSPHORYL]-L-SERINE
lig 30
SF4
I
202 8IRON/SULFUR CLUSTER
lig 31
SF4
I
203 8IRON/SULFUR CLUSTER
lig 32
PGT
J
201 51 PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]E
lig 33
T7X
J
202 61PHOSPHATIDYLINOSITOL
lig 34
DU0
J
203 37 YL]OXYETHYL]PROPANE-1,3-DIOL
lig 35
DU0
J
204 37 YL]OXYETHYL]PROPANE-1,3-DIOL
lig 36
PGT
J
205 51 PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]E
lig 37
PGT
K
201 51 PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]E
lig 38
3PH
L
801 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 39
3PE
L
802 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 40
PC1
L
803 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 41
PGT
L
804 51 PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]E
lig 42
3PE
L
805 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 43
3PE
L
806 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 44
3PH
L
807 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 45
3PE
L
808 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 46
P5S
L
809 54 PROPYL]OXY}(HYDROXY)PHOSPHORYL]-L-SERINE
lig 47
3PH
L
810 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 48
3PH
L
811 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 49
PC1
M
601 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 50
PGT
M
602 51 PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]E
lig 51
3PH
M
603 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 52
3PH
M
604 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 53
3PH
M
605 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 54
3PH
M
606 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 55
DU0
M
607 37 YL]OXYETHYL]PROPANE-1,3-DIOL
lig 56
PC1
M
608 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 57
PC1
M
609 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 58
DU0
M
610 37 YL]OXYETHYL]PROPANE-1,3-DIOL
lig 59
PC1
N
501 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 60
PC1
N
502 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 61
3PH
N
503 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 62
PC1
N
504 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 63
PGT
N
505 51 PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]E
lig 64
PGT
P
401 51 PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]E
lig 65
3PH
P
402 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 66
3PE
P
403 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 67
ZN
R
101 1ZINC ION
lig 68
PC1
a
501 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 69
3PE
a
502 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 70
3PE
a
503 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 71
3PH
a
504 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 72
HEM
a
505 43PROTOPORPHYRIN IX CONTAINING FE
lig 73
3PH
a
506 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 74
PC1
a
507 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 75
3PE
a
508 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 76
3PE
a
509 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 77
3PH
a
510 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 78
U10
a
511 63UBIQUINONE-10
lig 79
U10
a
512 63UBIQUINONE-10
lig 80
P5S
a
513 54 PROPYL]OXY}(HYDROXY)PHOSPHORYL]-L-SERINE
lig 81
PGT
a
514 51 PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]E
lig 82
HEM
a
515 43PROTOPORPHYRIN IX CONTAINING FE
lig 83
DU0
a
516 37 YL]OXYETHYL]PROPANE-1,3-DIOL
lig 84
PC1
a
517 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 85
PC1
b
501 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 86
HEC
b
502 43HEME C
lig 87
CA
b
503 1CALCIUM ION
lig 88
PC1
b
504 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 89
3PE
c
201 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 90
DU0
c
202 37 YL]OXYETHYL]PROPANE-1,3-DIOL
lig 91
PC1
c
203 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 92
FES
c
204 4FE2/S2 (INORGANIC) CLUSTER
lig 93
DU0
c
205 37 YL]OXYETHYL]PROPANE-1,3-DIOL
lig 94
3PH
c
206 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 95
CDL
d
501 100CARDIOLIPIN
lig 96
3PH
d
502 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 97
3PE
d
503 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 98
U10
d
504 63UBIQUINONE-10
lig 99
DU0
d
505 37 YL]OXYETHYL]PROPANE-1,3-DIOL
lig 100
U10
d
506 63UBIQUINONE-10
lig 101
HEM
d
507 43PROTOPORPHYRIN IX CONTAINING FE
lig 102
3PH
d
508 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 103
PC1
d
509 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 104
3PE
d
510 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 105
DU0
d
511 37 YL]OXYETHYL]PROPANE-1,3-DIOL
lig 106
DU0
d
512 37 YL]OXYETHYL]PROPANE-1,3-DIOL
lig 107
3PH
d
513 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 108
HEM
d
514 43PROTOPORPHYRIN IX CONTAINING FE
lig 109
3PE
d
515 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 110
PC1
d
516 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 111
CA
e
501 1CALCIUM ION
lig 112
3PE
e
502 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 113
DU0
e
503 37 YL]OXYETHYL]PROPANE-1,3-DIOL
lig 114
HEC
e
504 43HEME C
lig 115
3PE
e
505 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 116
PC1
f
201 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 117
DU0
f
202 37 YL]OXYETHYL]PROPANE-1,3-DIOL
lig 118
3PH
f
203 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 119
FES
f
204 4FE2/S2 (INORGANIC) CLUSTER
lig 120
3PH
f
205 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 121
3PE
g
601 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 122
PGT
g
602 51 PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]E
lig 123
3PH
g
603 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 124
DU0
g
604 37 YL]OXYETHYL]PROPANE-1,3-DIOL
lig 125
DU0
g
605 37 YL]OXYETHYL]PROPANE-1,3-DIOL
lig 126
HEA
g
606 60HEME-A
lig 127
3PE
g
607 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 128
CA
g
608 1CALCIUM ION
lig 129
CU
g
609 1COPPER (II) ION
lig 130
HEA
g
610 60HEME-A
lig 131
3PH
g
611 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 132
PC1
g
612 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 133
3PE
g
613 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 134
MN
g
614 1MANGANESE (II) ION
lig 135
T7X
g
615 61PHOSPHATIDYLINOSITOL
lig 136
DU0
g
616 37 YL]OXYETHYL]PROPANE-1,3-DIOL
lig 137
DU0
g
617 37 YL]OXYETHYL]PROPANE-1,3-DIOL
lig 138
3PE
h
301 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 139
PC1
h
302 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 140
DU0
h
303 37 YL]OXYETHYL]PROPANE-1,3-DIOL
lig 141
DU0
h
304 37 YL]OXYETHYL]PROPANE-1,3-DIOL
lig 142
CUA
h
305 2DINUCLEAR COPPER ION
lig 143
DU0
h
306 37 YL]OXYETHYL]PROPANE-1,3-DIOL
lig 144
3PE
h
307 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 145
3PH
i
301 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 146
DU0
i
302 37 YL]OXYETHYL]PROPANE-1,3-DIOL
lig 147
3PH
i
303 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 148
3PH
i
304 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 149
DU0
i
305 37 YL]OXYETHYL]PROPANE-1,3-DIOL
lig 150
3PE
i
306 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 151
3PE
i
307 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 152
PC1
i
308 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 153
3PE
i
309 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 154
PC1
i
310 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 155
3PE
i
311 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 156
ZN
i
312 1ZINC ION
lig 157
PC1
i
313 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 158
3PH
i
314 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 159
DU0
i
315 37 YL]OXYETHYL]PROPANE-1,3-DIOL
lig 160
DU0
i
316 37 YL]OXYETHYL]PROPANE-1,3-DIOL
lig 161
3PE
i
317 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 162
3PH
i
318 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 163
PC1
j
1001 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 164
DU0
j
1002 37 YL]OXYETHYL]PROPANE-1,3-DIOL
lig 165
3PH
j
1003 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 166
3PH
k
601 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 167
CA
k
602 1CALCIUM ION
lig 168
3PE
k
603 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 169
HEA
k
604 60HEME-A
lig 170
HEA
k
605 60HEME-A
lig 171
PC1
k
606 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 172
3PH
k
607 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 173
DU0
k
608 37 YL]OXYETHYL]PROPANE-1,3-DIOL
lig 174
PC1
k
609 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 175
CU
k
610 1COPPER (II) ION
lig 176
MN
k
611 1MANGANESE (II) ION
lig 177
PC1
l
301 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 178
CUA
l
302 2DINUCLEAR COPPER ION
lig 179
PC1
l
303 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 180
PC1
l
304 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 181
3PH
m
301 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 182
DU0
m
302 37 YL]OXYETHYL]PROPANE-1,3-DIOL
lig 183
PC1
m
303 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 184
3PE
m
304 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 185
3PE
m
305 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 186
3PE
m
306 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 187
3PE
m
307 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 188
ZN
m
308 1ZINC ION
lig 189
3PH
m
309 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 190
3PE
m
310 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 191
PC1
m
311 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 192
PC1
m
312 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 193
DU0
m
313 37 YL]OXYETHYL]PROPANE-1,3-DIOL
lig 194
PC1
m
314 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 195
3PE
m
315 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 196
PC1
n
1001 541,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 197
3PE
n
1002 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 198
3PH
o
201 481,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
lig 199
3PE
p
1001 511,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 200
PGT
q
1000 51 PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]E