Analysis of Ligand-Protein Contacts in PDB entry:
9HDF


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 97 ligands in PDB entry 9HDF. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
CSO
B
622 7S-HYDROXYCYSTEINE
lig 2
CSO
E
622 7S-HYDROXYCYSTEINE
lig 3
CSO
J
622 7S-HYDROXYCYSTEINE
lig 4
CSO
K
622 7S-HYDROXYCYSTEINE
lig 5
CSO
N
622 7S-HYDROXYCYSTEINE
lig 6
CSO
O
622 7S-HYDROXYCYSTEINE
lig 7
DEX
A
1001 28DEXAMETHASONE
lig 8
CAC
A
1002 5CACODYLATE ION
lig 9
EPE
A
1003 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 10
GOL
A
1004 6GLYCEROL
lig 11
GOL
A
1005 6GLYCEROL
lig 12
SO4
A
1006 5SULFATE ION
lig 13
CL
B
801 1CHLORIDE ION
lig 14
DEX
B
802 28DEXAMETHASONE
lig 15
PG4
B
803 13TETRAETHYLENE GLYCOL
lig 16
EPE
B
804 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 17
GOL
B
805 6GLYCEROL
lig 18
IMD
B
806 5IMIDAZOLE
lig 19
IMD
B
807 5IMIDAZOLE
lig 20
SO4
B
808 5SULFATE ION
lig 21
CL
B
809 1CHLORIDE ION
lig 22
CL
B
810 1CHLORIDE ION
lig 23
DEX
C
1001 28DEXAMETHASONE
lig 24
GOL
C
1002 6GLYCEROL
lig 25
GOL
C
1003 6GLYCEROL
lig 26
IMD
C
1004 5IMIDAZOLE
lig 27
SO4
C
1005 5SULFATE ION
lig 28
SO4
C
1006 5SULFATE ION
lig 29
CL
C
1007 1CHLORIDE ION
lig 30
CAC
D
801 5CACODYLATE ION
lig 31
DEX
D
802 28DEXAMETHASONE
lig 32
PG4
D
803 13TETRAETHYLENE GLYCOL
lig 33
EPE
D
804 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 34
CL
D
805 1CHLORIDE ION
lig 35
DEX
E
1001 28DEXAMETHASONE
lig 36
CAC
E
1002 5CACODYLATE ION
lig 37
GOL
E
1003 6GLYCEROL
lig 38
GOL
E
1004 6GLYCEROL
lig 39
GOL
E
1005 6GLYCEROL
lig 40
IMD
E
1006 5IMIDAZOLE
lig 41
CL
E
1007 1CHLORIDE ION
lig 42
DEX
F
1001 28DEXAMETHASONE
lig 43
PEG
F
1002 7DI(HYDROXYETHYL)ETHER
lig 44
IMD
F
1003 5IMIDAZOLE
lig 45
CL
F
1004 1CHLORIDE ION
lig 46
DEX
G
1001 28DEXAMETHASONE
lig 47
CAC
H
801 5CACODYLATE ION
lig 48
DEX
H
802 28DEXAMETHASONE
lig 49
PG4
H
803 13TETRAETHYLENE GLYCOL
lig 50
DEX
I
1001 28DEXAMETHASONE
lig 51
CAC
I
1002 5CACODYLATE ION
lig 52
PEG
I
1003 7DI(HYDROXYETHYL)ETHER
lig 53
EPE
I
1004 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 54
GOL
I
1005 6GLYCEROL
lig 55
IMD
I
1006 5IMIDAZOLE
lig 56
SO4
J
801 5SULFATE ION
lig 57
DEX
J
802 28DEXAMETHASONE
lig 58
EPE
J
803 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 59
GOL
J
804 6GLYCEROL
lig 60
GOL
J
805 6GLYCEROL
lig 61
GOL
J
806 6GLYCEROL
lig 62
IMD
J
807 5IMIDAZOLE
lig 63
IMD
J
808 5IMIDAZOLE
lig 64
CL
J
809 1CHLORIDE ION
lig 65
PEG
K
801 7DI(HYDROXYETHYL)ETHER
lig 66
DEX
K
802 28DEXAMETHASONE
lig 67
CAC
K
803 5CACODYLATE ION
lig 68
GOL
K
804 6GLYCEROL
lig 69
GOL
K
805 6GLYCEROL
lig 70
DEX
L
1001 28DEXAMETHASONE
lig 71
PG4
L
1002 13TETRAETHYLENE GLYCOL
lig 72
EPE
L
1003 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 73
GOL
L
1004 6GLYCEROL
lig 74
GOL
L
1005 6GLYCEROL
lig 75
IMD
L
1006 5IMIDAZOLE
lig 76
IMD
L
1007 5IMIDAZOLE
lig 77
CL
L
1008 1CHLORIDE ION
lig 78
GOL
M
801 6GLYCEROL
lig 79
DEX
M
802 28DEXAMETHASONE
lig 80
CAC
M
803 5CACODYLATE ION
lig 81
PGE
M
804 10TRIETHYLENE GLYCOL
lig 82
PEG
M
805 7DI(HYDROXYETHYL)ETHER
lig 83
IMD
M
806 5IMIDAZOLE
lig 84
CL
M
807 1CHLORIDE ION
lig 85
DEX
N
1001 28DEXAMETHASONE
lig 86
GOL
N
1002 6GLYCEROL
lig 87
IMD
N
1003 5IMIDAZOLE
lig 88
CL
N
1004 1CHLORIDE ION
lig 89
DEX
O
1001 28DEXAMETHASONE
lig 90
CAC
O
1002 5CACODYLATE ION
lig 91
GOL
O
1003 6GLYCEROL
lig 92
IMD
O
1004 5IMIDAZOLE
lig 93
DEX
P
1001 28DEXAMETHASONE
lig 94
EPE
P
1002 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 95
GOL
P
1003 6GLYCEROL
lig 96
IMD
b
101 5IMIDAZOLE
lig 97
IMD
d
101 5IMIDAZOLE