Analysis of Ligand-Protein Contacts in PDB entry:
9M5A

Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 192 ligands in PDB entry 9M5A. Click on ligand of interest for LPC analysis.

	HET ID	Chain ID	Residue N	Number of atoms	Ligand name
lig 1	FME	I	1	10	N-FORMYLMETHIONINE
lig 2	FME	M	1	10	N-FORMYLMETHIONINE
lig 3	FME	T	1	10	N-FORMYLMETHIONINE
lig 4	FME	i	1	10	N-FORMYLMETHIONINE
lig 5	FME	m	1	10	N-FORMYLMETHIONINE
lig 6	FME	t	1	10	N-FORMYLMETHIONINE
lig 7	OEX	A	401	10	CA-MN4-O5 CLUSTER
lig 8	FE2	A	402	1	FE (II) ION
lig 9	CL	A	403	1	CHLORIDE ION
lig 10	CL	A	404	1	CHLORIDE ION
lig 11	CLA	A	405	65	CHLOROPHYLL A
lig 12	CLA	A	406	56	CHLOROPHYLL A
lig 13	PHO	A	407	64	PHEOPHYTIN A
lig 14	CLA	A	408	52	CHLOROPHYLL A
lig 15	BCR	A	409	40	BETA-CAROTENE
lig 16	LMG	A	410	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 17	PL9	A	411	42	BENZOQUINONE
lig 18	SQD	A	412	39	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 19	UNL	A	413	6	UNKNOWN LIGAND
lig 20	CLA	B	601	58	CHLOROPHYLL A
lig 21	CLA	B	602	65	CHLOROPHYLL A
lig 22	CLA	B	603	65	CHLOROPHYLL A
lig 23	CLA	B	604	65	CHLOROPHYLL A
lig 24	CLA	B	605	65	CHLOROPHYLL A
lig 25	CLA	B	606	65	CHLOROPHYLL A
lig 26	CLA	B	607	65	CHLOROPHYLL A
lig 27	CLA	B	608	65	CHLOROPHYLL A
lig 28	CLA	B	609	65	CHLOROPHYLL A
lig 29	CLA	B	610	65	CHLOROPHYLL A
lig 30	CLA	B	611	65	CHLOROPHYLL A
lig 31	CLA	B	612	65	CHLOROPHYLL A
lig 32	CLA	B	613	55	CHLOROPHYLL A
lig 33	CLA	B	614	54	CHLOROPHYLL A
lig 34	CLA	B	615	65	CHLOROPHYLL A
lig 35	CLA	B	616	65	CHLOROPHYLL A
lig 36	BCR	B	617	40	BETA-CAROTENE
lig 37	BCR	B	618	37	BETA-CAROTENE
lig 38	BCR	B	619	40	BETA-CAROTENE
lig 39	LMG	B	620	47	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 40	LMT	B	621	35	DODECYL-BETA-D-MALTOSIDE
lig 41	UNL	B	622	14	UNKNOWN LIGAND
lig 42	LMT	B	623	17	DODECYL-BETA-D-MALTOSIDE
lig 43	SQD	C	501	32	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 44	CLA	C	502	65	CHLOROPHYLL A
lig 45	CLA	C	503	65	CHLOROPHYLL A
lig 46	CLA	C	504	65	CHLOROPHYLL A
lig 47	CLA	C	505	65	CHLOROPHYLL A
lig 48	CLA	C	506	65	CHLOROPHYLL A
lig 49	CLA	C	507	46	CHLOROPHYLL A
lig 50	CLA	C	508	65	CHLOROPHYLL A
lig 51	CLA	C	509	60	CHLOROPHYLL A
lig 52	CLA	C	510	65	CHLOROPHYLL A
lig 53	CLA	C	511	65	CHLOROPHYLL A
lig 54	CLA	C	512	65	CHLOROPHYLL A
lig 55	CLA	C	513	52	CHLOROPHYLL A
lig 56	CLA	C	514	42	CHLOROPHYLL A
lig 57	BCR	C	515	38	BETA-CAROTENE
lig 58	BCR	C	516	40	BETA-CAROTENE
lig 59	DGD	C	517	53	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 60	DGD	C	518	52	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 61	DGD	C	519	60	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 62	LMG	C	520	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 63	LMG	C	521	16	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 64	PHO	D	401	64	PHEOPHYTIN A
lig 65	CLA	D	402	65	CHLOROPHYLL A
lig 66	UNL	D	403	5	UNKNOWN LIGAND
lig 67	BCT	D	404	4	BICARBONATE ION
lig 68	CLA	D	405	65	CHLOROPHYLL A
lig 69	CLA	D	406	48	CHLOROPHYLL A
lig 70	BCR	D	407	40	BETA-CAROTENE
lig 71	PL9	D	408	55	BENZOQUINONE
lig 72	LHG	D	409	43	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 73	LHG	D	410	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 74	LHG	D	411	45	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 75	LMG	D	412	43	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 76	UNL	D	413	22	UNKNOWN LIGAND
lig 77	UNL	D	414	15	UNKNOWN LIGAND
lig 78	SQD	D	415	27	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 79	HEM	F	101	43	PROTOPORPHYRIN IX CONTAINING FE
lig 80	RRX	H	101	41	(3R)-BETA,BETA-CAROTEN-3-OL
lig 81	DGD	H	102	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 82	UNL	I	101	6	UNKNOWN LIGAND
lig 83	UNL	I	102	6	UNKNOWN LIGAND
lig 84	MG	J	101	1	MAGNESIUM ION
lig 85	LMT	J	102	24	DODECYL-BETA-D-MALTOSIDE
lig 86	UNL	K	101	15	UNKNOWN LIGAND
lig 87	BCR	K	102	40	BETA-CAROTENE
lig 88	LHG	L	101	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 89	LMT	M	101	35	DODECYL-BETA-D-MALTOSIDE
lig 90	BCR	T	101	39	BETA-CAROTENE
lig 91	UNL	T	102	7	UNKNOWN LIGAND
lig 92	SQD	T	103	27	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 93	LMT	T	104	17	DODECYL-BETA-D-MALTOSIDE
lig 94	LMT	T	105	13	DODECYL-BETA-D-MALTOSIDE
lig 95	HEC	V	201	43	HEME C
lig 96	UNL	X	101	15	UNKNOWN LIGAND
lig 97	BCR	Y	101	40	BETA-CAROTENE
lig 98	OEX	a	401	10	CA-MN4-O5 CLUSTER
lig 99	FE2	a	402	1	FE (II) ION
lig 100	CL	a	403	1	CHLORIDE ION
lig 101	CL	a	404	1	CHLORIDE ION
lig 102	CLA	a	405	65	CHLOROPHYLL A
lig 103	CLA	a	406	56	CHLOROPHYLL A
lig 104	PHO	a	407	64	PHEOPHYTIN A
lig 105	CLA	a	408	52	CHLOROPHYLL A
lig 106	BCR	a	409	40	BETA-CAROTENE
lig 107	LMG	a	410	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 108	PL9	a	411	42	BENZOQUINONE
lig 109	SQD	a	412	39	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 110	UNL	a	413	6	UNKNOWN LIGAND
lig 111	CLA	b	601	58	CHLOROPHYLL A
lig 112	CLA	b	602	65	CHLOROPHYLL A
lig 113	CLA	b	603	65	CHLOROPHYLL A
lig 114	CLA	b	604	65	CHLOROPHYLL A
lig 115	CLA	b	605	65	CHLOROPHYLL A
lig 116	CLA	b	606	65	CHLOROPHYLL A
lig 117	CLA	b	607	65	CHLOROPHYLL A
lig 118	CLA	b	608	65	CHLOROPHYLL A
lig 119	CLA	b	609	65	CHLOROPHYLL A
lig 120	CLA	b	610	65	CHLOROPHYLL A
lig 121	CLA	b	611	65	CHLOROPHYLL A
lig 122	CLA	b	612	65	CHLOROPHYLL A
lig 123	CLA	b	613	55	CHLOROPHYLL A
lig 124	CLA	b	614	54	CHLOROPHYLL A
lig 125	CLA	b	615	65	CHLOROPHYLL A
lig 126	CLA	b	616	65	CHLOROPHYLL A
lig 127	BCR	b	617	40	BETA-CAROTENE
lig 128	BCR	b	618	37	BETA-CAROTENE
lig 129	BCR	b	619	40	BETA-CAROTENE
lig 130	LMG	b	620	47	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 131	LMT	b	621	35	DODECYL-BETA-D-MALTOSIDE
lig 132	UNL	b	622	14	UNKNOWN LIGAND
lig 133	SQD	c	501	32	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 134	CLA	c	502	65	CHLOROPHYLL A
lig 135	CLA	c	503	65	CHLOROPHYLL A
lig 136	CLA	c	504	65	CHLOROPHYLL A
lig 137	CLA	c	505	65	CHLOROPHYLL A
lig 138	CLA	c	506	65	CHLOROPHYLL A
lig 139	CLA	c	507	46	CHLOROPHYLL A
lig 140	CLA	c	508	65	CHLOROPHYLL A
lig 141	CLA	c	509	60	CHLOROPHYLL A
lig 142	CLA	c	510	65	CHLOROPHYLL A
lig 143	CLA	c	511	65	CHLOROPHYLL A
lig 144	CLA	c	512	65	CHLOROPHYLL A
lig 145	CLA	c	513	52	CHLOROPHYLL A
lig 146	CLA	c	514	42	CHLOROPHYLL A
lig 147	BCR	c	515	38	BETA-CAROTENE
lig 148	BCR	c	516	40	BETA-CAROTENE
lig 149	DGD	c	517	53	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 150	DGD	c	518	52	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 151	DGD	c	519	60	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 152	LMG	c	520	51	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 153	LMG	c	521	16	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 154	PHO	d	401	64	PHEOPHYTIN A
lig 155	CLA	d	402	65	CHLOROPHYLL A
lig 156	UNL	d	403	5	UNKNOWN LIGAND
lig 157	BCT	d	404	4	BICARBONATE ION
lig 158	CLA	d	405	65	CHLOROPHYLL A
lig 159	CLA	d	406	48	CHLOROPHYLL A
lig 160	BCR	d	407	40	BETA-CAROTENE
lig 161	PL9	d	408	55	BENZOQUINONE
lig 162	LHG	d	409	43	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 163	LHG	d	410	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 164	LHG	d	411	45	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 165	LMG	d	412	43	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
lig 166	UNL	d	413	22	UNKNOWN LIGAND
lig 167	UNL	d	414	15	UNKNOWN LIGAND
lig 168	SQD	d	415	27	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 169	HEM	f	101	43	PROTOPORPHYRIN IX CONTAINING FE
lig 170	RRX	h	101	41	(3R)-BETA,BETA-CAROTEN-3-OL
lig 171	DGD	h	102	62	DIGALACTOSYL DIACYL GLYCEROL (DGDG)
lig 172	UNL	i	101	6	UNKNOWN LIGAND
lig 173	UNL	i	102	6	UNKNOWN LIGAND
lig 174	MG	j	101	1	MAGNESIUM ION
lig 175	LMT	j	102	24	DODECYL-BETA-D-MALTOSIDE
lig 176	UNL	k	101	15	UNKNOWN LIGAND
lig 177	BCR	k	102	40	BETA-CAROTENE
lig 178	LHG	l	101	49	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 179	LMT	m	101	35	DODECYL-BETA-D-MALTOSIDE
lig 180	SQD	t	101	27	GLUCOPYRANOSYL]-SN-GLYCEROL
lig 181	LMT	t	102	13	DODECYL-BETA-D-MALTOSIDE
lig 182	BCR	t	103	39	BETA-CAROTENE
lig 183	UNL	t	104	7	UNKNOWN LIGAND
lig 184	HEC	v	201	43	HEME C
lig 185	UNL	x	101	15	UNKNOWN LIGAND
lig 186	BCR	y	101	40	BETA-CAROTENE
lig 187	LHG	E	101	35	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 188	UNL	E	102	10	UNKNOWN LIGAND
lig 189	CA	O	301	1	CALCIUM ION
lig 190	LHG	e	101	35	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
lig 191	UNL	e	102	10	UNKNOWN LIGAND
lig 192	CA	o	301	1	CALCIUM ION

Analysis of Ligand-Protein Contacts in PDB entry: 9M5A

Analysis of Ligand-Protein Contacts in PDB entry:
9M5A