Analysis of Ligand-Protein Contacts in PDB entry:
9MD3


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 72 ligands in PDB entry 9MD3. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
M
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
M
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
N
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
N
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
BMA
N
3 11BETA-D-MANNOPYRANOSE
lig 6
MAN
N
4 11ALPHA-D-MANNOPYRANOSE
lig 7
NAG
N
5 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
MAN
N
6 11ALPHA-D-MANNOPYRANOSE
lig 9
MAN
N
7 11ALPHA-D-MANNOPYRANOSE
lig 10
NAG
O
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
O
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
BMA
O
3 11BETA-D-MANNOPYRANOSE
lig 13
MAN
O
4 11ALPHA-D-MANNOPYRANOSE
lig 14
MAN
O
5 11ALPHA-D-MANNOPYRANOSE
lig 15
NAG
P
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
NAG
P
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
NAG
Q
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
NAG
Q
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
BMA
Q
3 11BETA-D-MANNOPYRANOSE
lig 20
MAN
Q
4 11ALPHA-D-MANNOPYRANOSE
lig 21
NAG
Q
5 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
MAN
Q
6 11ALPHA-D-MANNOPYRANOSE
lig 23
MAN
Q
7 11ALPHA-D-MANNOPYRANOSE
lig 24
NAG
R
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 25
NAG
R
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 26
BMA
R
3 11BETA-D-MANNOPYRANOSE
lig 27
MAN
R
4 11ALPHA-D-MANNOPYRANOSE
lig 28
MAN
R
5 11ALPHA-D-MANNOPYRANOSE
lig 29
NAG
S
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 30
NAG
S
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 31
NAG
T
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 32
NAG
T
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 33
BMA
T
3 11BETA-D-MANNOPYRANOSE
lig 34
MAN
T
4 11ALPHA-D-MANNOPYRANOSE
lig 35
NAG
T
5 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 36
MAN
T
6 11ALPHA-D-MANNOPYRANOSE
lig 37
MAN
T
7 11ALPHA-D-MANNOPYRANOSE
lig 38
NAG
U
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 39
NAG
U
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 40
BMA
U
3 11BETA-D-MANNOPYRANOSE
lig 41
MAN
U
4 11ALPHA-D-MANNOPYRANOSE
lig 42
MAN
U
5 11ALPHA-D-MANNOPYRANOSE
lig 43
NAG
V
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 44
NAG
V
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 45
NAG
W
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 46
NAG
W
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 47
BMA
W
3 11BETA-D-MANNOPYRANOSE
lig 48
MAN
W
4 11ALPHA-D-MANNOPYRANOSE
lig 49
NAG
W
5 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 50
MAN
W
6 11ALPHA-D-MANNOPYRANOSE
lig 51
MAN
W
7 11ALPHA-D-MANNOPYRANOSE
lig 52
NAG
X
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 53
NAG
X
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 54
BMA
X
3 11BETA-D-MANNOPYRANOSE
lig 55
MAN
X
4 11ALPHA-D-MANNOPYRANOSE
lig 56
MAN
X
5 11ALPHA-D-MANNOPYRANOSE
lig 57
CA
A
501 1CALCIUM ION
lig 58
NAG
A
502 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 59
NAG
A
503 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 60
NAG
A
504 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 61
CA
B
501 1CALCIUM ION
lig 62
NAG
B
502 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 63
NAG
B
503 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 64
NAG
B
504 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 65
CA
C
501 1CALCIUM ION
lig 66
NAG
C
502 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 67
NAG
C
503 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 68
NAG
C
504 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 69
CA
D
501 1CALCIUM ION
lig 70
NAG
D
502 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 71
NAG
D
503 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 72
NAG
D
504 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE