Analysis of Ligand-Protein Contacts in PDB entry:
9QEF


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 84 ligands in PDB entry 9QEF. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
HEC
O
301 43HEME C
lig 2
HEC
O
302 43HEME C
lig 3
MQ9
O
303 58MENAQUINONE-9
lig 4
WUO
O
304 97ACYL-PHOSPHATIDYL-MYO-INOSITOL DIMANNOSIDE
lig 5
FES
M
501 4FE2/S2 (INORGANIC) CLUSTER
lig 6
IZL
M
502 114 (10~{R})-10-METHYLDODECANOATE
lig 7
9YF
M
503 58 9-METHYLOCTADECANOATE
lig 8
7PH
M
504 38 TETRADECANOATE
lig 9
HEM
N
601 43PROTOPORPHYRIN IX CONTAINING FE
lig 10
CDL
N
602 74CARDIOLIPIN
lig 11
CDL
N
603 77CARDIOLIPIN
lig 12
CDL
N
604 79CARDIOLIPIN
lig 13
MQ9
N
605 58MENAQUINONE-9
lig 14
HEM
N
606 43PROTOPORPHYRIN IX CONTAINING FE
lig 15
MQ9
N
607 58MENAQUINONE-9
lig 16
PLM
N
608 11PALMITIC ACID
lig 17
9XX
N
609 32 METHYLOCTADECANOATE
lig 18
CDL
P
301 77CARDIOLIPIN
lig 19
WUO
P
302 97ACYL-PHOSPHATIDYL-MYO-INOSITOL DIMANNOSIDE
lig 20
CDL
P
303 77CARDIOLIPIN
lig 21
7PH
S
501 38 TETRADECANOATE
lig 22
TRD
S
502 13TRIDECANE
lig 23
3PE
S
503 321,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 24
MQ9
T
1301 58MENAQUINONE-9
lig 25
CDL
T
1302 79CARDIOLIPIN
lig 26
TRD
T
1303 13TRIDECANE
lig 27
CDL
R
601 77CARDIOLIPIN
lig 28
HEA
R
602 60HEME-A
lig 29
HEA
R
603 60HEME-A
lig 30
CU
R
604 1COPPER (II) ION
lig 31
CDL
R
605 77CARDIOLIPIN
lig 32
MG
R
606 1MAGNESIUM ION
lig 33
CA
R
607 1CALCIUM ION
lig 34
TRD
R
608 13TRIDECANE
lig 35
TRD
R
609 13TRIDECANE
lig 36
CU
Q
401 1COPPER (II) ION
lig 37
CU
Q
402 1COPPER (II) ION
lig 38
TRD
Q
403 13TRIDECANE
lig 39
9YF
W
201 58 9-METHYLOCTADECANOATE
lig 40
9XX
W
202 42 METHYLOCTADECANOATE
lig 41
PLM
W
203 11PALMITIC ACID
lig 42
HEC
C
301 43HEME C
lig 43
HEC
C
302 43HEME C
lig 44
MQ9
C
303 58MENAQUINONE-9
lig 45
WUO
C
304 97ACYL-PHOSPHATIDYL-MYO-INOSITOL DIMANNOSIDE
lig 46
MQ9
C
305 58MENAQUINONE-9
lig 47
FES
G
501 4FE2/S2 (INORGANIC) CLUSTER
lig 48
IZL
G
502 114 (10~{R})-10-METHYLDODECANOATE
lig 49
9YF
G
503 58 9-METHYLOCTADECANOATE
lig 50
7PH
G
504 38 TETRADECANOATE
lig 51
7PH
G
505 38 TETRADECANOATE
lig 52
CDL
G
506 79CARDIOLIPIN
lig 53
7PH
H
1001 38 TETRADECANOATE
lig 54
HEM
H
1002 43PROTOPORPHYRIN IX CONTAINING FE
lig 55
CDL
H
1003 74CARDIOLIPIN
lig 56
CDL
H
1004 77CARDIOLIPIN
lig 57
CDL
H
1005 79CARDIOLIPIN
lig 58
MQ9
H
1006 58MENAQUINONE-9
lig 59
HEM
H
1007 43PROTOPORPHYRIN IX CONTAINING FE
lig 60
DCQ
H
1008 23 DIONE
lig 61
CDL
I
301 77CARDIOLIPIN
lig 62
CDL
I
302 77CARDIOLIPIN
lig 63
WUO
I
303 97ACYL-PHOSPHATIDYL-MYO-INOSITOL DIMANNOSIDE
lig 64
TRD
J
601 13TRIDECANE
lig 65
3PE
J
602 321,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 66
CDL
K
201 79CARDIOLIPIN
lig 67
TRD
K
202 13TRIDECANE
lig 68
CDL
L
601 79CARDIOLIPIN
lig 69
HEA
L
602 60HEME-A
lig 70
HEA
L
603 60HEME-A
lig 71
CU
L
604 1COPPER (II) ION
lig 72
MG
L
605 1MAGNESIUM ION
lig 73
CA
L
606 1CALCIUM ION
lig 74
TRD
L
607 13TRIDECANE
lig 75
TRD
L
608 13TRIDECANE
lig 76
CDL
L
609 77CARDIOLIPIN
lig 77
PLM
L
610 11PALMITIC ACID
lig 78
CU
X
401 1COPPER (II) ION
lig 79
CU
X
402 1COPPER (II) ION
lig 80
TRD
X
403 13TRIDECANE
lig 81
9YF
b
201 58 9-METHYLOCTADECANOATE
lig 82
9XX
b
202 32 METHYLOCTADECANOATE
lig 83
PLM
c
301 11PALMITIC ACID
lig 84
9XX
c
302 32 METHYLOCTADECANOATE