Analysis of Ligand-Protein Contacts in PDB entry:
9RGD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 78 ligands in PDB entry 9RGD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
F
3 11BETA-D-MANNOPYRANOSE
lig 4
MAN
F
4 11ALPHA-D-MANNOPYRANOSE
lig 5
MAN
F
5 11ALPHA-D-MANNOPYRANOSE
lig 6
MAN
F
6 11ALPHA-D-MANNOPYRANOSE
lig 7
MAN
F
7 11ALPHA-D-MANNOPYRANOSE
lig 8
MAN
F
8 11ALPHA-D-MANNOPYRANOSE
lig 9
MAN
F
9 11ALPHA-D-MANNOPYRANOSE
lig 10
MAN
F
10 11ALPHA-D-MANNOPYRANOSE
lig 11
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
BMA
G
3 11BETA-D-MANNOPYRANOSE
lig 14
MAN
G
4 11ALPHA-D-MANNOPYRANOSE
lig 15
MAN
G
5 11ALPHA-D-MANNOPYRANOSE
lig 16
MAN
G
6 11ALPHA-D-MANNOPYRANOSE
lig 17
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
BMA
H
3 11BETA-D-MANNOPYRANOSE
lig 20
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
NAG
I
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 23
NAG
J
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 24
BMA
J
3 11BETA-D-MANNOPYRANOSE
lig 25
MAN
J
4 11ALPHA-D-MANNOPYRANOSE
lig 26
MAN
J
5 11ALPHA-D-MANNOPYRANOSE
lig 27
MAN
J
6 11ALPHA-D-MANNOPYRANOSE
lig 28
NAG
K
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 29
NAG
K
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 30
BMA
K
3 11BETA-D-MANNOPYRANOSE
lig 31
MAN
K
4 11ALPHA-D-MANNOPYRANOSE
lig 32
MAN
K
5 11ALPHA-D-MANNOPYRANOSE
lig 33
MAN
K
6 11ALPHA-D-MANNOPYRANOSE
lig 34
NAG
L
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 35
NAG
L
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 36
BMA
L
3 11BETA-D-MANNOPYRANOSE
lig 37
D10
A
4201 10DECANE
lig 38
PT5
A
4202 69 ICOSA-5,8,11,14-TETRAENOATE
lig 39
R16
A
4203 16HEXADECANE
lig 40
EPE
A
4204 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 41
PX2
A
4205 361,2-DILAUROYL-SN-GLYCERO-3-PHOSPHATE
lig 42
OLC
A
4206 25(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 43
PX2
A
4207 361,2-DILAUROYL-SN-GLYCERO-3-PHOSPHATE
lig 44
PLM
A
4208 18PALMITIC ACID
lig 45
HEX
A
4209 6HEXANE
lig 46
D10
A
4210 10DECANE
lig 47
HEX
B
501 6HEXANE
lig 48
HEX
B
502 6HEXANE
lig 49
D10
B
503 10DECANE
lig 50
D10
B
504 10DECANE
lig 51
OLC
B
505 25(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 52
R16
B
506 16HEXADECANE
lig 53
D10
B
507 10DECANE
lig 54
HEX
C
501 6HEXANE
lig 55
NAG
C
502 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 56
HEX
C
503 6HEXANE
lig 57
PLM
C
504 18PALMITIC ACID
lig 58
PGW
C
505 51 OCTADEC-9-ENOATE
lig 59
HEX
C
506 6HEXANE
lig 60
HEX
C
507 6HEXANE
lig 61
PLM
C
508 18PALMITIC ACID
lig 62
CL
C
509 1CHLORIDE ION
lig 63
PT5
D
501 69 ICOSA-5,8,11,14-TETRAENOATE
lig 64
NAG
D
502 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 65
HEX
D
503 6HEXANE
lig 66
D10
D
504 10DECANE
lig 67
R16
D
505 16HEXADECANE
lig 68
R16
D
506 16HEXADECANE
lig 69
D10
D
507 10DECANE
lig 70
PX2
D
508 361,2-DILAUROYL-SN-GLYCERO-3-PHOSPHATE
lig 71
OLC
E
501 25(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-EN
lig 72
D10
E
502 10DECANE
lig 73
HEX
E
503 6HEXANE
lig 74
D10
E
504 10DECANE
lig 75
D10
E
505 10DECANE
lig 76
R16
E
506 16HEXADECANE
lig 77
HEX
E
507 6HEXANE
lig 78
HEX
E
508 6HEXANE