Analysis of Ligand-Protein Contacts in PDB entry:
9SMF


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 72 ligands in PDB entry 9SMF. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
FME
A
1 10N-FORMYLMETHIONINE
lig 2
WYK
B
77 12(2S,4S)-4-HYDROXY-L-ARGININE
lig 3
2MR
D
85 13N3, N4-DIMETHYLARGININE
lig 4
FME
H
1 10N-FORMYLMETHIONINE
lig 5
FME
J
1 10N-FORMYLMETHIONINE
lig 6
FME
K
1 10N-FORMYLMETHIONINE
lig 7
FME
L
1 10N-FORMYLMETHIONINE
lig 8
FME
M
1 10N-FORMYLMETHIONINE
lig 9
FME
N
1 10N-FORMYLMETHIONINE
lig 10
ACE
Y
1 3ACETYL GROUP
lig 11
ACE
d
1 3ACETYL GROUP
lig 12
ACE
i
1 3ACETYL GROUP
lig 13
ACE
r
1 3ACETYL GROUP
lig 14
3PE
A
201 471,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 15
PC1
A
202 351,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 16
PC1
A
203 351,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 17
SF4
B
201 8IRON/SULFUR CLUSTER
lig 18
PC1
B
202 441,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 19
U10
D
701 63UBIQUINONE-10
lig 20
FES
E
301 4FE2/S2 (INORGANIC) CLUSTER
lig 21
FMN
F
501 31FLAVIN MONONUCLEOTIDE
lig 22
SF4
F
502 8IRON/SULFUR CLUSTER
lig 23
NAI
F
503 441,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTI
lig 24
SF4
G
801 8IRON/SULFUR CLUSTER
lig 25
SF4
G
802 8IRON/SULFUR CLUSTER
lig 26
FES
G
803 4FE2/S2 (INORGANIC) CLUSTER
lig 27
K
G
804 1POTASSIUM ION
lig 28
3PE
H
601 341,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 29
CDL
H
602 69CARDIOLIPIN
lig 30
PC1
H
603 441,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 31
3PE
I
201 451,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 32
SF4
I
202 8IRON/SULFUR CLUSTER
lig 33
SF4
I
203 8IRON/SULFUR CLUSTER
lig 34
PC1
I
204 401,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 35
3PE
K
101 421,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 36
3PE
L
701 461,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 37
CDL
L
702 78CARDIOLIPIN
lig 38
3PE
L
703 451,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 39
3PE
L
704 311,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 40
3PE
L
705 311,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 41
PC1
M
501 421,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 42
3PE
M
502 501,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 43
3PE
N
901 491,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 44
CDL
N
902 100CARDIOLIPIN
lig 45
CDL
N
903 62CARDIOLIPIN
lig 46
PC1
N
904 391,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 47
CDL
N
905 65CARDIOLIPIN
lig 48
DGT
O
401 312'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
lig 49
MG
O
402 1MAGNESIUM ION
lig 50
PC1
P
401 331,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 51
PC1
P
402 461,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 52
NDP
P
403 48 PHOSPHATE
lig 53
3PE
P
404 351,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 54
ZN
R
201 1ZINC ION
lig 55
EHZ
T
101 37 (3~{S})-3-OXIDANYLTETRADECANETHIOATE
lig 56
EHZ
U
101 37 (3~{S})-3-OXIDANYLTETRADECANETHIOATE
lig 57
CDL
X
201 86CARDIOLIPIN
lig 58
3PE
Y
201 431,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 59
3PE
Y
202 311,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 60
3PE
Y
203 401,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 61
3PE
Y
204 341,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 62
3PE
Y
205 271,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 63
3PE
Y
206 491,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 64
3PE
b
101 391,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 65
3PE
d
201 491,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 66
CDL
h
201 78CARDIOLIPIN
lig 67
PC1
h
202 441,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 68
CHD
i
201 29CHOLIC ACID
lig 69
3PE
m
201 411,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMI
lig 70
MYR
o
201 15MYRISTIC ACID
lig 71
PC1
q
201 491,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
lig 72
CDL
q
202 61CARDIOLIPIN